Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00092 ATGATGTTCATTCACCATATGCATGCATCTATATATTATGACGATACAGCTTCAATTTTTATTAAAATGCATCTCTCTTTTCTACCTAAAATGCCTACCCAATTCCTTCTCTTTCTTGCCTTCTTTCTATGTTCCTTTGCTTCAGGGAACGCTAACTCAATCCAACTGGGGTCCAGCATTGTGGCCGGCACCAATTTATCTTGGCGATCACCCTCAGGAGATTATGCCTTTGGTTTCTTCCACCTTCCTAGTGGCCGCTATCTTGTTGGAATTTGGTTTGACAAAATTCCAAAGAACACATTGGTTTGGTCTGCAAACCGCGACAATCCAGTTGAAATTGGATCATCCATCAATCTCACACGAAGTGGCCAATTTGTGGTCCAACCTCTCAATGGGGATTCATTTTCCATCTATAAAGGAACAAACACAGCATCTGCAGTGATGCAGGATGATGGGAATTTCGTTTTGAGGAGTTCACTTTCCAACGTTATATGGCAGAGCTTTGATTCACCCACGGATACTCTTCTATTAGGCCAAACTTTGAATACCAGTCGGAAACTCTTCTCCAATGCCAATGGATCAGTAGACTACTCAACGGGACAATACACTTTGGAGATCCAACAAGATGGCAACATTGTTCTTAAAGCTTATCGGTTCACGGATTCTGCCTACTGGTGGAGTGACACTGCCGGTAATACAGGTGTGAGAATTATTTTTGACAACTCAACAGCTTTTCTTTACGCGGTCAATGACACCAACCAAATTATATCTAACATGACTACTGAAGTAGTGGGTTCAATCGAAGATTACTATCATCGTGTGTTGGTGGATGACAAGGGAAACTTTCAGAAGTTGATTTACCATAAAGAAAATGGAAATGAGTGGAGATCTGTGTGGCCGGCCGTAACAAAGCCTTGCTCTGTGACTGCCCTTTGTGGGGTGTATGGCTTTTGCAACACATCTGATTCTGACACCCAAACATACACTTGTGGTTGCTTGCCAGGCTATACTCCTCTGGATCCAAAGGCACCCTCCAAGGGGTGCTATCTCAGTGAGGTCAAGGACTTGTGTGTTGTAAATTCTTCTGCCTCAAACTTTGAGGTGGAAGTGAAAGAGATTCAAGATGCTAATATACCGAACGAAGGTTACTTTTTTTTTGATCTACAAGTCATAAATAACATGGATCTGGAAAGTTGCAAGAGGGAACTGATGAATGATTGTCTCTGCATGGTTGCTGTCTCAATTGGCACTGATTGTGTTAAGAAAATGTGGCCAATTATAAATGCCATAAGAACCATCCCTGACACTAGTAATCGTGTGATGCTTATTAAAGTTCCTCTGGTTGACAACAACATGGACAATGAAAAGGATTCATCGTCTTTGGTTGTTTTGGTGGTGGCTCTCGTTTCTTGCTCCCTACTTGCTGTACTGTTTGCAGCCACTGCCATTTATCATCACCCCGTTTGTCAGCATCTCATGCACAGACGAGCACCACCAAAGCCAAAGCCTGTGGATATCAATCTAAAGGTATTTTCATTCCAACAGCTGAGAGAAGCAACTAATGGATTCAAAGACAAACTTGGTCGAGGTGCCTATGGTACGGTGTATAGTGGGGTTTTAAACTTGGAGGATCAACAGGTTGATGTTGCTGTCAAACAACTGGAGCAAGTAGAGGACCAAGGTGATAAAGAATTTGTGACAGAAGTTCAAGTTATTGCTCTCACTTATCATAGAAATCTAGTTGGTTTATTGGGCTTTTGCAATGAGCAGAGTCATAGGCTTTTGGTTTATGAGAAAATGGAAAATGGTACACTATCCAACTTCCTTTTCGGAGAAGGGGATAAACCCAGCTGGGAGAGTAGAGTCAGAATTGTGCTTGAAATTGCAAGAGGCTTATTATATCTGCATGAAGAGTGTGACCATCAAATCATCCACTGCGACATAAAGCCTCAGAATGTTCTACTTGACTCTATTTACACTGCAAAGATCTCAGATTTTGGACTGGCAAAGTTGCTAATGAAAGATAAAACTCGAACAAACACCAATGCTAGAGGGACAGTGGGATATATGGCACCAGAATGGCTTAAGAATGCACCTGTTACTACAAAGGTGGATATCTACAGCTTTGGTGTGATGTTGTTGGAAATCATATTTTGCAGAAAGCACATTGAGTTGCATCAAATTGAGGATGAAGCAATGGGTGATGACTTAATACTAACAGATTGGGTTTTGTATCTGGCAAAAGAGAAGAATTTAAGAGCCCCAGTGATTGATCATCTTGAAGATGAAAGTGATATCAGGAGGTTTGAAAGAATGGCAATGGTTGGATTATGGTGTATAAATCCCAATCCAACTCTTCGCCCACCTATGACAACAGTGGTACAAATGTTGGAAGGAAACGTAGAAGTGGGTGTTCCTCCACTCAACTCATAG 2433 0.4164 MMFIHHMHASIYYDDTASIFIKMHLSFLPKMPTQFLLFLAFFLCSFASGNANSIQLGSSIVAGTNLSWRSPSGDYAFGFFHLPSGRYLVGIWFDKIPKNTLVWSANRDNPVEIGSSINLTRSGQFVVQPLNGDSFSIYKGTNTASAVMQDDGNFVLRSSLSNVIWQSFDSPTDTLLLGQTLNTSRKLFSNANGSVDYSTGQYTLEIQQDGNIVLKAYRFTDSAYWWSDTAGNTGVRIIFDNSTAFLYAVNDTNQIISNMTTEVVGSIEDYYHRVLVDDKGNFQKLIYHKENGNEWRSVWPAVTKPCSVTALCGVYGFCNTSDSDTQTYTCGCLPGYTPLDPKAPSKGCYLSEVKDLCVVNSSASNFEVEVKEIQDANIPNEGYFFFDLQVINNMDLESCKRELMNDCLCMVAVSIGTDCVKKMWPIINAIRTIPDTSNRVMLIKVPLVDNNMDNEKDSSSLVVLVVALVSCSLLAVLFAATAIYHHPVCQHLMHRRAPPKPKPVDINLKVFSFQQLREATNGFKDKLGRGAYGTVYSGVLNLEDQQVDVAVKQLEQVEDQGDKEFVTEVQVIALTYHRNLVGLLGFCNEQSHRLLVYEKMENGTLSNFLFGEGDKPSWESRVRIVLEIARGLLYLHEECDHQIIHCDIKPQNVLLDSIYTAKISDFGLAKLLMKDKTRTNTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVMLLEIIFCRKHIELHQIEDEAMGDDLILTDWVLYLAKEKNLRAPVIDHLEDESDIRRFERMAMVGLWCINPNPTLRPPMTTVVQMLEGNVEVGVPPLNS 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00092 810 Pfam Protein kinase domain 524 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00092 810 FunFam S-receptor-like serine/threonine-protein kinase 492 599 - -
Phco4g00092 810 Gene3D Phosphorylase Kinase; domain 1 498 598 - -
Phco4g00092 810 ProSiteProfiles Protein kinase domain profile. 521 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00092 810 SMART blect_4 59 171 IPR001480 -
Phco4g00092 810 Gene3D - 45 169 IPR036426 -
Phco4g00092 810 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 805 - -
Phco4g00092 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 229 IPR036426 -
Phco4g00092 810 Pfam S-locus glycoprotein domain 253 338 IPR000858 GO:0048544
Phco4g00092 810 SMART serkin_6 521 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00092 810 Coils Coil 540 560 - -
Phco4g00092 810 Gene3D Transferase(Phosphotransferase) domain 1 600 803 - -
Phco4g00092 810 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 48 169 - -
Phco4g00092 810 ProSitePatterns Protein kinases ATP-binding region signature. 527 552 IPR017441 GO:0005524
Phco4g00092 810 Gene3D - 171 310 - -
Phco4g00092 810 CDD STKc_IRAK 527 799 - -
Phco4g00092 810 ProSiteProfiles Bulb-type lectin domain profile. 51 169 IPR001480 -
Phco4g00092 810 Pfam D-mannose binding lectin 100 186 IPR001480 -
Phco4g00092 810 SUPERFAMILY Protein kinase-like (PK-like) 501 798 IPR011009 -
Phco4g00092 810 PIRSF SRK 24 810 IPR024171 GO:0004674
Phco4g00092 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Phco4g00092 810 CDD B_lectin 70 171 IPR001480 -
Phco4g00092 810 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 63 807 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00092 Phco-Chr4 613598 616030 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco4g00092 Pkinase 1.6e-48 CL0016