Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00089 ATGTCTTTAGCTATCTTTCTCTCTTCCATTCTTGTACTACTTTCACTTCTGAATGGCTTCCATGCCACCATACAACCAAACACATATATCACTGCTGGATCAAACTCTACCTGGAAGTCACCCTCGGGTGATTTTGAATTTGGATTCCTCCATCTTCGCAGTGGTCTCTTTCTTGTGGGAATATGGTTTGGGAAAATTACGGAGAGAAAGCTGGCATGGTACCTGGCTCCCCCTGTGGAACCAAATTCCCAAATCCAATTCACTTCTGTTGGACAACTTCTGATAGTATACCCAAACCAGACCACTGCTCAGACCATATATAGTGGAGCAAACGGTGGGGCGGCAACATCTGCCACCATGCAAGACGATGGCAATTTTGTCATGAAGGACTCCAATTTAAGCCATGTGTGGGAGAGTTTCAACTTTTCAGCCAACACAATCTTACCAGGCCAAACCTTGCAGACTAATCAAACCCTCTTTTCCAAGGGGAGAGAACCTTCAAACTACTCACAGGGAAATTTCATGCTACTAATGCAAAATGATGGCAACTTGTTGCTCAAAGCTCTCCAATGGTCTGACCGTGCATACTGGTATTATTCAACCCAAACCTCCAATGTGAGATTGGTGTTTAATGCTTCCACTGCTCTCATGTACCTTATCAACGACACTGGGAAAATCTTCAATCTAACCAAAACCACTCCAACCCCGGTGGAGGATTACTATCACCTTGCTACAATAGATGAGAATGGGAATTTCCAGCAATATGCATATCACAAGAGGAATGGGACGGAATGGAGCAGGGTTTGGAGAGCTGTGGAGGATCCCTGCAGAGTGTATCTTGTCTGTGGTGTGTATGGCTTGTGCACTTCTCCTGACAATGAATCAGTCAAGTGTGAGTGTATTCCAGGTTATATCCCATTGGATGATCAAGATGTTTCCAAAGGGTGTCAACCACCAGTTGTCGTCAATTACTGTGCAGAGACCAACTCCAAGCTCCAGGTCTTTGACGATACTGATTTTAATTTTGATATTCGTCATTTTAGTTTTGATAGTGTTGACTTCGAAAGTTGTAAGAAGGCTGTAATAGATGATTGTAACATCGTTGCTGCAACTTATAACCATTCCACCTCCACATGTGTCAAGAAGAGACTGCCCTTACTGAATGCTAGAAATAGCTCTTCTTCAAAGGGAATGAAAGCACTGCTTAAAGTTGCTGACAGGGTTGAGTATGGGACACCTAAAGTTCCTAAGAAGAAAAGTTTTAATGTAAGAGTCTTTTTGAAGGTTCTTCTTGCAGTTATTGCCACTCTTGCCTGTTTCTTTGGTGCTCTTGCTGTCTACTATCATCCTTTCGCTCGGAGACTAACAAGAAGAAGGAAGCATCTGAATGCAACCGCTATTGGAATCAACTTCAGGGAATTCACCTTTCAGGAGCTGCATGAAGCAACAGACGGATTCACTAGGATTCTTGGAAGGGGAGCTTCAGGAAAAGTCTACCGTGGTGCTTTAATAATAGACGGTGCAGAGATTGGTATTGCAGTAAAGACACTGGAAAAGAAAATTGAGAAAAGTGAAAGAGAATTCATGACTGAGCTCAAAATTATTGGTCGTACCCATCACAGAAATTTGGTGAGGCTTTTGGGTTTTTGCTTTGAGAGTAGCCATCGAATTATAGTATATGAGTTGATGCCAAATGGAGCACTCTCCAGTTTTCTGTTTGGAGAGGGAGAAAGGCCTCAATGGGGTCAGAGGATTGAAATGGCTCTTGGAGTCGCAAGGGGGTTGCTATACTTGCACGAAGAGTGCAACACCCAAATCATACATTGTGACATCAAGCCCGAAAATGTGTTACTTGATGCCAATTACACAGCAAAGATTGCAGATTTTGGGTTGTCCAAGCTTTTGAAGAAAGATCAAACTAGAACAAACACTAATTTAAGAGGCACAATGGGATACATGGCACCTGAATGGCTAAAGAGTGCACCGATAACTGCCAAAGTTGACATATACAGTTTTGGGGTTATGTTATTGGAGATTATTTGCTACAGAAAGCACATTGAGGTTTGTGAGGCTGGAAAAGACAGTGAAGATGATGATTTGATTCTTTCAAAATGGGTTTTAAGGTGTGTGGTGTTTAGGCAACTAGAGCTAGTGGTGAGACATGACTCAGAAGTGTTGAATGATTTCAAGAGGTTTGAGGAAATGGCCCTGGTTGGACTATGGTGTCTTCATCCAAATCCTGCTCTAAGACCTTCAATGAAGCACGTGATGCAGATGCTAGATGGAACCGTGGAAGTTGGTGTTCCTCCTTTGGTTTATGAGCAGATGATGCCAGACCAAGGCTTATAG 2349 0.4278 MSLAIFLSSILVLLSLLNGFHATIQPNTYITAGSNSTWKSPSGDFEFGFLHLRSGLFLVGIWFGKITERKLAWYLAPPVEPNSQIQFTSVGQLLIVYPNQTTAQTIYSGANGGAATSATMQDDGNFVMKDSNLSHVWESFNFSANTILPGQTLQTNQTLFSKGREPSNYSQGNFMLLMQNDGNLLLKALQWSDRAYWYYSTQTSNVRLVFNASTALMYLINDTGKIFNLTKTTPTPVEDYYHLATIDENGNFQQYAYHKRNGTEWSRVWRAVEDPCRVYLVCGVYGLCTSPDNESVKCECIPGYIPLDDQDVSKGCQPPVVVNYCAETNSKLQVFDDTDFNFDIRHFSFDSVDFESCKKAVIDDCNIVAATYNHSTSTCVKKRLPLLNARNSSSSKGMKALLKVADRVEYGTPKVPKKKSFNVRVFLKVLLAVIATLACFFGALAVYYHPFARRLTRRRKHLNATAIGINFREFTFQELHEATDGFTRILGRGASGKVYRGALIIDGAEIGIAVKTLEKKIEKSEREFMTELKIIGRTHHRNLVRLLGFCFESSHRIIVYELMPNGALSSFLFGEGERPQWGQRIEMALGVARGLLYLHEECNTQIIHCDIKPENVLLDANYTAKIADFGLSKLLKKDQTRTNTNLRGTMGYMAPEWLKSAPITAKVDIYSFGVMLLEIICYRKHIEVCEAGKDSEDDDLILSKWVLRCVVFRQLELVVRHDSEVLNDFKRFEEMALVGLWCLHPNPALRPSMKHVMQMLDGTVEVGVPPLVYEQMMPDQGL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00089 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 563 768 - -
Phco4g00089 782 SUPERFAMILY Protein kinase-like (PK-like) 471 769 IPR011009 -
Phco4g00089 782 CDD STKc_IRAK 490 762 - -
Phco4g00089 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Phco4g00089 782 SMART blect_4 29 143 IPR001480 -
Phco4g00089 782 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 201 IPR036426 -
Phco4g00089 782 ProSiteProfiles Protein kinase domain profile. 484 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00089 782 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 30 770 - -
Phco4g00089 782 Gene3D - 15 142 IPR036426 -
Phco4g00089 782 Pfam Protein kinase domain 488 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00089 782 FunFam S-receptor-like serine/threonine-protein kinase 453 562 - -
Phco4g00089 782 SMART serkin_6 484 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00089 782 ProSitePatterns Protein kinases ATP-binding region signature. 490 515 IPR017441 GO:0005524
Phco4g00089 782 Pfam S-locus glycoprotein domain 240 306 IPR000858 GO:0048544
Phco4g00089 782 Gene3D Transferase(Phosphotransferase) domain 1 563 766 - -
Phco4g00089 782 Gene3D Phosphorylase Kinase; domain 1 458 562 - -
Phco4g00089 782 PIRSF SRK 1 778 IPR024171 GO:0004674
Phco4g00089 782 Pfam D-mannose binding lectin 79 158 IPR001480 -
Phco4g00089 782 Gene3D - 143 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00089 Phco-Chr4 595127 597475 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco4g00089 Pkinase 1.7e-49 CL0016