Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00087 ATGGCTGCTGAATTTCTTGGTCTCTCTGTTGCCATACTTCTGTTTTTCAATGTTCCAAGCATTGCCAACCCAATTGAACTGGGATCCAGCATTGTGGCAGGAAGTGGCACCAATTCATCTTGGCGATCATCCTCTGGGGATTATGCTTTTGGATTCTATCACCTTGTTACTGGCCGCTATCTTGTTGGAATTTGGTTTGACAAAATTCCAAACAAAACATTGGTTTGGTCTGCAAACCGCGACAACCCAGTTGAAATTGGATCATCCATCAATCTCACACGAAGTGGCCAATTTGTGGTCCAACCTCTCAATGGGGATTCGTTTTCCATCTATAAAGGAACAAACACAGCATCTGCAGTGATGCAGGATGATGGGAATTTTGTCTTGAGGAATTCACTTTCCAACGTTATATGGCAGAGCTTTGATTCACCCACGGATACTCTTCTATTAGGCCAAACTTTGAATACCAGTCGGAAACTCTACTCCAATGCCAATGGATCAGTAGACTACTCAACTGGACAATACAGTTTGGAGATCCAACAATGGGATGGAAACATTGTTCTTAAAGCTTATCCGTTCACGGATTCTGCCCACTGGTGGAGTGACACTGCCGGTAATACAGGTGTGAGAATTATTTTTAACAACACAACAGCTTTTCTTTACGCGGTCAATGACACCCACCAAATTATATCTAACATGACTACGGAAGTAGTGGGTCCAATCCAAGATTACTATCATCGTGTGTTGGTGGATGACAAGGGAAACTTTCAGAAGTTGATTTACCATAAAGAAAATGGAAATGAGTGGAGAACTGTTTGGCAGGCCGTAACAAAGCCTTGCACTGTCACTGCCCTTTGTGGGGTGTATGGCTTTTGCAACACATCTGGTTCTGACACCCAGACATACACTTGTGGTTGCTTGCCAGGCTATACTCCTTTGGATCCAACGGCACCCTCCAAGGGGTGCTATCTCAGTGTGGTCAAGGACTTGTGTGCTGCAAATTCTTCTGCCTCAAACTTTATGGTGGATGTGAAAGAGATTCAAGATGCTAATATACCGAACGACGGTTACTTTTTTCTTGATCTACAAGTCTTAGATAGGATGGATTTGGAAAGTTGCAAGAGGGAACTGATGGATGATTGTCTCTGCATGGCTGCTGTTTTAGATGGCACTGCTTGCCATAAGAAAAAGTGGCCAATTATAAATGCCATAAGAATCATCCCTGACACTAGTAATCGTGTGATGCTTATTAAAGTTCCTCTGGTTGACAACAACATGGACAATGAAAAGGATTCATCGTCTTTGGTTGTTTTGGTGGTGGCTCTCGTTTCTTGCTCCCTACTTGCTGTACTGTTTGCAGCCACTGCCATTTATCATCACCCCGTTTGTCAGCATCTCATGCACAGACGAGCACCACCAAAGCCAAAGCCTGTGGATATCAATCTAAAGGTATTTTCATTCCAACAGCTGAGAGAAGCAACTAATGGATTCAAAGACAAACTTGGTCGAGGTGCCTATGGTACGGTGTATAGTGGGGTTTTAAACTTGGAGGATCAACAGGTTGATGTTGCTGTCAAACAACTGGAGCAAGTAGAGGACCAAGGTGATAAAGAATTTGTGACAGAAGTTCAAGTTATTGCTCTCACTTATCATAGAAATCTGGTTGGTTTATTGGGCTTTTGCAATGAGCAGAGTCATAGGCTTTTGGTTTATGAGAAAATGGAAAATGGTACACTATCCAACTTCCTTTTCGGAGAAGGGGATAAACCCAGCTGGGAGAGTAGAGTCAGAATTGTGCTTGAAATTGCAAGAGGCTTATTATATCTGCATGAAGAGTGTGACCATCAAATCATCCACTGTGACATAAAGCCTCAGAATGTTCTGCTTGACTCTAGTTACACTGCAAAGATCTCAGATTTTGGACTGGCAAAGTTGCTAATGAAAGATAAAACTCGAACAAACACCAATGCTAGAGGGACAGTGGGATATATGGCACCAGAATGGCTAAAAAATGCACCTGTTACTACAAAGGTGGATATCTACAGCTTTGGTGTGATGTTGTTGGAAATCATATTTTGCAGAAAACACACTGAGTTGCATCAAATTGAGGATGAAACAATGGTTGATGACTTAATACTAACAGATTGGGTTTTGTATCTGGCAAAAGAGAAGACTTTAAGAGCCCCAGTGATTGATCATCTTGAAGATGAAAGTGATATCAGGAGCTTTGAAAGAATGGCAATGGTTGGATTATGGTGCGTAAACACCAATCCAACTCTTCGACCATCTATGAAACTTGTGGTACAGATGTTGGAAGGAAACGTAGAAGTGGGTGTTCCTCCACTCAACTCTTAG 2355 0.4225 MAAEFLGLSVAILLFFNVPSIANPIELGSSIVAGSGTNSSWRSSSGDYAFGFYHLVTGRYLVGIWFDKIPNKTLVWSANRDNPVEIGSSINLTRSGQFVVQPLNGDSFSIYKGTNTASAVMQDDGNFVLRNSLSNVIWQSFDSPTDTLLLGQTLNTSRKLYSNANGSVDYSTGQYSLEIQQWDGNIVLKAYPFTDSAHWWSDTAGNTGVRIIFNNTTAFLYAVNDTHQIISNMTTEVVGPIQDYYHRVLVDDKGNFQKLIYHKENGNEWRTVWQAVTKPCTVTALCGVYGFCNTSGSDTQTYTCGCLPGYTPLDPTAPSKGCYLSVVKDLCAANSSASNFMVDVKEIQDANIPNDGYFFLDLQVLDRMDLESCKRELMDDCLCMAAVLDGTACHKKKWPIINAIRIIPDTSNRVMLIKVPLVDNNMDNEKDSSSLVVLVVALVSCSLLAVLFAATAIYHHPVCQHLMHRRAPPKPKPVDINLKVFSFQQLREATNGFKDKLGRGAYGTVYSGVLNLEDQQVDVAVKQLEQVEDQGDKEFVTEVQVIALTYHRNLVGLLGFCNEQSHRLLVYEKMENGTLSNFLFGEGDKPSWESRVRIVLEIARGLLYLHEECDHQIIHCDIKPQNVLLDSSYTAKISDFGLAKLLMKDKTRTNTNARGTVGYMAPEWLKNAPVTTKVDIYSFGVMLLEIIFCRKHTELHQIEDETMVDDLILTDWVLYLAKEKTLRAPVIDHLEDESDIRSFERMAMVGLWCVNTNPTLRPSMKLVVQMLEGNVEVGVPPLNS 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00087 784 SMART blect_4 22 144 IPR001480 -
Phco4g00087 784 ProSiteProfiles Protein kinase domain profile. 495 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00087 784 Gene3D - 145 285 - -
Phco4g00087 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 779 - -
Phco4g00087 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 142 - -
Phco4g00087 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Phco4g00087 784 Gene3D - 25 143 IPR036426 -
Phco4g00087 784 CDD EGF 279 311 - -
Phco4g00087 784 CDD B_lectin 43 144 IPR001480 -
Phco4g00087 784 Gene3D Transferase(Phosphotransferase) domain 1 574 777 - -
Phco4g00087 784 ProSiteProfiles Bulb-type lectin domain profile. 28 142 IPR001480 -
Phco4g00087 784 Coils Coil 514 534 - -
Phco4g00087 784 ProSitePatterns Protein kinases ATP-binding region signature. 501 526 IPR017441 GO:0005524
Phco4g00087 784 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 36 781 - -
Phco4g00087 784 Pfam D-mannose binding lectin 73 159 IPR001480 -
Phco4g00087 784 Pfam Protein kinase domain 498 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00087 784 SUPERFAMILY Protein kinase-like (PK-like) 475 772 IPR011009 -
Phco4g00087 784 Gene3D Phosphorylase Kinase; domain 1 472 572 - -
Phco4g00087 784 Pfam S-locus glycoprotein domain 242 312 IPR000858 GO:0048544
Phco4g00087 784 FunFam S-receptor-like serine/threonine-protein kinase 466 573 - -
Phco4g00087 784 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 203 IPR036426 -
Phco4g00087 784 SMART serkin_6 495 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00087 784 CDD STKc_IRAK 501 773 - -
Phco4g00087 784 PIRSF SRK 1 784 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00087 Phco-Chr4 586002 588356 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco4g00087 Pkinase 5.2e-50 CL0016