Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00079 ATGGGTCGGCCCAATAACCTCTGCCCAACATTGATCTCTTCCCTTCTGGAGTCTCTTTCGACTGTTCGTCCTTTGACTTCCGCAGAAGCTTTAATTCAAGGCAATTTCGGAATTACCCCTCCGATCTGGCACTCACTCGCTTGTTCAAATCCCGAATTCCATTTGGAGCACCCTTTTTTTTTTCCTTCTTCTTCTTCTTCTTCTCCTTCATCTCTTCCGCGCCTCGTTTCTAACACTTTGGGTTGCGTCTCCCAAAGACAGAGGGACCTTCTCCTCCTTCTTCCTCTTCTCCTTCTTTTGTCGTCCATGGACCTTCACGCCCGGCCAGATCACTGCCTCCCGGAGAGGAAAGGCCAGAAGAGGAAGCTGGAGGAGGATTTCGAAGACGACCGACAGATCTCTGCACCTCCCACCGGCCACGCTCGGGACGCCCTCCTCTCCGACGTCAAGGACCAGGTCATCGTCCTCGATTCCACCTTCTCATGGAAGGAATCCGATCGTGCTGCCGCCAAGCGCGCCACGCACGCCCTTGCCGATCTCGCAAAAAACGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCCATTCCTGCTCTGGTTAAACATCTTAAAGCGCCTCCTCTGGTCGGAAGCGACCTGTTGCAGAGGCCAATGCCGTTTGAGCACGAGGTCGAGAAAGGAAGTGCTTTCGCGCTTGGACTTCTCGCAGTCAAGCCGGAGCACCAGCAGCTCATCGTTGACAGTGGTGCTCTAAAACATCTCGTTGATCTTTTGAAAAGACATGAAAACGGCTTAACGTCTCGTGCCATCAATAGTCTAATTCGTAGGGCTGCAGACGCGATTACTAATCTTGCTCATGAGAACAGCAGTATTAAGACTCGTGTCAGGATCGAAGGTGGGATTCCGCCGCTTGTTCATTTACTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGAGAACCCTTGCTTTCAAAAATGATGAAAATAAAAATCAGATCGTTGAATGCAATGCCCTTCCAACTCTGATTCTAATGCTTCGTTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGGGCCCTACAACCGGTCATTGGATTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGGGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCCCCTGATATTCAGCTAAAAGAAATGTCTGCCTTTGCATTGGGGAGATTGGCCCAGGACACGCATAATCAAGCTGGTATTGCACACAATGGTGGCTTGATTCCCTTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGGCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAGGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCACGGGCGAGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAGAAGGCTTTTCAAAGACGTGTTGCTTTGGCTCTTGCTCACCTTTGTTCTGCTGATGACCAGAGAAAAATATTTATAGAACACCATGGTTTGGAGTTGCTTATGGGGCTTCTTGGCTCTTATTATAACTCTAAGCAACAACTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGGCACGACTCTGTCTCCAGTAGATGCTGCACCCCCATCTCCCACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGCTACCTTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCACAGAATTTGTCTGCTTGCATCTTCAGACGCATTCCGTGCTATGTTTGATGGTGGTTATAGGGAGAAGGAGGCACGGGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCTGATGATGAGATTTATATACACTGGATCAGTTGAGATCACTCTTGACATTGCCCAAGATCTCCTCCGAGCAGCCGATCAATATCTTTTAGAAGGACTCAAGAGACTCTGCGAGTACACGATTGCGCAGGATATATCACTTGAGAGCGTATCAAGTATGTATGAACTTTCTGAAGCATTTAATGCTATATCGTTGAGGCACACATGCATCCTTTTTATCTTGGAACACTTCGATAAATTGAGTGGAAAGCCAGGACACTCCCACCTGATTCAGCGTATAATACCTGAGATTCAGAATTACTTTGGTAAAGCCCTTACAAAGGGCATTTCCAACAATCAGCCGTAG 2430 0.4663 MGRPNNLCPTLISSLLESLSTVRPLTSAEALIQGNFGITPPIWHSLACSNPEFHLEHPFFFPSSSSSSPSSLPRLVSNTLGCVSQRQRDLLLLLPLLLLLSSMDLHARPDHCLPERKGQKRKLEEDFEDDRQISAPPTGHARDALLSDVKDQVIVLDSTFSWKESDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLKAPPLVGSDLLQRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHENGLTSRAINSLIRRAADAITNLAHENSSIKTRVRIEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDIQLKEMSAFALGRLAQDTHNQAGIAHNGGLIPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKIFIEHHGLELLMGLLGSYYNSKQQLDGAVALCKLANKGTTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLESVSSMYELSEAFNAISLRHTCILFILEHFDKLSGKPGHSHLIQRIIPEIQNYFGKALTKGISNNQP 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00079 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Phco4g00079 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 299 334 IPR000225 GO:0005515
Phco4g00079 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Phco4g00079 809 ProSiteProfiles BTB domain profile. 643 710 IPR000210 GO:0005515
Phco4g00079 809 Pfam Armadillo/beta-catenin-like repeat 330 369 IPR000225 GO:0005515
Phco4g00079 809 Pfam Armadillo/beta-catenin-like repeat 295 327 IPR000225 GO:0005515
Phco4g00079 809 Pfam Armadillo/beta-catenin-like repeat 414 453 IPR000225 GO:0005515
Phco4g00079 809 SUPERFAMILY POZ domain 635 737 IPR011333 -
Phco4g00079 809 Gene3D Potassium Channel Kv1.1; Chain A 626 772 IPR011333 -
Phco4g00079 809 MobiDBLite consensus disorder prediction 110 136 - -
Phco4g00079 809 SUPERFAMILY ARM repeat 169 609 IPR016024 -
Phco4g00079 809 Pfam BTB/POZ domain 636 738 IPR000210 GO:0005515
Phco4g00079 809 CDD BTB_POZ_ARIA_plant 630 745 - -
Phco4g00079 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 508 IPR000225 GO:0005515
Phco4g00079 809 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 249 299 IPR000225 GO:0005515
Phco4g00079 809 Gene3D - 452 515 IPR011989 -
Phco4g00079 809 Gene3D - 153 451 IPR011989 -
Phco4g00079 809 FunFam Armadillo/beta-catenin repeat family protein 634 778 - -
Phco4g00079 809 Gene3D - 518 625 IPR011989 -
Phco4g00079 809 SMART BTB_4 643 740 IPR000210 GO:0005515
Phco4g00079 809 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 111 806 IPR044282 -
Phco4g00079 809 MobiDBLite consensus disorder prediction 110 140 - -
Phco4g00079 809 SMART arm_5 455 495 IPR000225 GO:0005515
Phco4g00079 809 SMART arm_5 288 328 IPR000225 GO:0005515
Phco4g00079 809 SMART arm_5 372 412 IPR000225 GO:0005515
Phco4g00079 809 SMART arm_5 414 454 IPR000225 GO:0005515
Phco4g00079 809 SMART arm_5 570 611 IPR000225 GO:0005515
Phco4g00079 809 SMART arm_5 238 286 IPR000225 GO:0005515
Phco4g00079 809 SMART arm_5 183 237 IPR000225 GO:0005515
Phco4g00079 809 SMART arm_5 330 370 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00079 Phco-Chr4 514236 523889 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco4g00079 BTB 3.5e-26 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00079 4 514236 523889 Phco4g00079 4 514236 523889 ECH
Phco4g00079 4 514236 523889 Phco6g02652 6 48177668 48186571 PCT