Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00067 ATGTTTCACACCAACATGTTTGATTCTCACCCTCACATGCTTGATATGTCACCCCACAAGACTACCTTCTCTGAGACCGACTTGGGAAGGCCCAGAGATGATGAATATGAGACCAAGTCTGGCACTGACACCATGGACGCTCCTTCCGGTGACGACCAAGACCCTAACCCAAGACCCAGAAAGAAGGGTTACCGTCGCCACACACAGCGCCAAATAGAAGAAATGGAAGCCTTCTTCAAACAGTGTCCCCACCCAGATGACAAGCAAAGAAAAGAGCTGAGCCGGGATTTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAGCATGAGCGACATGAAAATTCTATTCTGAAGGCCGAAAATGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAGGCCCTAACCAATGCTACATGCCCCAACTGTGGAGGCCCAGCTGCCCTTGGCGAAATGTCCTTCGACGAGCAGCACTTGAGGATAGAGAATGCTCGGTTGAGAGAAGAGATTGATAGGATTTCAGGAATTGCGGCCAAGTATGTTGGAAAGCCGGTGACGTCTTCGTACTCCAACCTTTCATCTCTCAACAACAATCGCATGCCTGTCGGTAACTATGGAGCACAGTCAGGCACGGTAGGAGAAATGTATGGTGGTAGTGACCTTTTTAGGTCACTCCCAGCTCCAGCTGATGCTGACAAGCCCATGATCGTGGAGCTTGCTGTTGCAGCTATGGAGGAACTAACAAGACTAGCTCAGGCTGGAGACTCTTTATGGGTCCCCGGAAACCACCACTCTGAGATTCTAAATGAAGAAGACTATTTGAGGACTTTCCCTAGTAGAGGTTTGGGTCCCAAACCTTTGGGCCTGAGATCCGAAGCTTCAAGGGAATCTGTGGTGGTCATCATGAATCACATTAACCTGATTGATATCCTTATGGATGTGAACCAATGGTCGACTATGTTTTGCGGTATTGTCTCGAGAGCATTGACCCTTGAAGTGCTTTCAACTGGTGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCGCTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCGGTGGTGGATGTTTCCTTGGATAATCTGCGACCCAGTACGATCTCAAGAAGCCGGAGAAGGCCCTCTGGCTGTTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTTACATGGATCGAACATGTAGAAGTGGATGATAGGGCGGTGCATAGCATATATAAAACTCTAGTCAATTCCGGTCTCGCCTTTGGAGCTAAACGCTGGGTGGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCCATGGCCAACAACATACAAGCAGGGAACCTCTGTGTGATAACGAGTGCTGAGGGAAGAAAGAGTATGCTGAAGCTGGCGGAGAGAATGGTCATTAGCTATTGCACTGGTGTAGGTGCTTCTACTGCACATGCTTGGACAACACTATCCGCAACTGGATGTGATGACGTAAGGGTCATGACTAGAAAGAGCACTGACGAACCTGGCAGACCACCCGGTATAGTGCTAAGTGCTGCCACTTCTTTCTGGCTCCCAGTTCCTCCAAAGAGGGTTTTTGATTTCCTACGTGCTGAAAACTCAAGAAATGAGTGGGACATTCTTTCCAACGGGGGTCAAGTTCAAGAATTGGCACACATAGCAAATGGCCGTGATCCTGGCAACTGTGTGTCCCTACTTAGAGTTAATAGTGCAAATTCGAGCCAAAGTAATATGCTGATACTTCAAGAGAGTTGCACTGATTCTACTGGATCCTATGTAGTATATGCTCCTGTGGATATTGTTGCCATGAATGTAGTATTGGGTGGAGGGGATCCAGATTATGTTGCCCTGCTTCCCTCAGGCTTTGCTATTCTTCCTGATGGGCCTGGAATAAACAGGGGGTCAATACTTGATGTTGGATCTGGAGGTTCTCTACTCACAGTTGCCTTCCAGATCTTAGTTGATTCAGCCCCAACAGCAAAGCTATCTTTGGGTTCAGTGGCTACTGTTAACAGTCTAATTAAGTGCACAGTTGAAAGGATCAAGGTTGCAGTGATACGTGACAACACCTAA 2184 0.4766 MFHTNMFDSHPHMLDMSPHKTTFSETDLGRPRDDEYETKSGTDTMDAPSGDDQDPNPRPRKKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMKTQHERHENSILKAENEKLRAENNRYKEALTNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNRMPVGNYGAQSGTVGEMYGGSDLFRSLPAPADADKPMIVELAVAAMEELTRLAQAGDSLWVPGNHHSEILNEEDYLRTFPSRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPSTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYKTLVNSGLAFGAKRWVATLDRQCERLASSMANNIQAGNLCVITSAEGRKSMLKLAERMVISYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPKRVFDFLRAENSRNEWDILSNGGQVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLGGGDPDYVALLPSGFAILPDGPGINRGSILDVGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNT 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00067 727 FunFam Homeobox-leucine zipper protein GLABRA 2 248 467 - -
Phco4g00067 727 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Phco4g00067 727 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Phco4g00067 727 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Phco4g00067 727 MobiDBLite consensus disorder prediction 25 41 - -
Phco4g00067 727 FunFam Homeobox-leucine zipper protein HDG1 49 134 - -
Phco4g00067 727 Gene3D - 313 470 IPR023393 -
Phco4g00067 727 SUPERFAMILY Bet v1-like 240 470 - -
Phco4g00067 727 SMART START_1 248 468 IPR002913 GO:0008289
Phco4g00067 727 CDD START_ArGLABRA2_like 243 467 - -
Phco4g00067 727 SUPERFAMILY Bet v1-like 489 718 - -
Phco4g00067 727 Gene3D - 48 134 - -
Phco4g00067 727 ProSiteProfiles START domain profile. 239 471 IPR002913 GO:0008289
Phco4g00067 727 Coils Coil 112 147 - -
Phco4g00067 727 SUPERFAMILY Homeodomain-like 45 118 IPR009057 -
Phco4g00067 727 MobiDBLite consensus disorder prediction 1 68 - -
Phco4g00067 727 Pfam START domain 249 468 IPR002913 GO:0008289
Phco4g00067 727 SMART HOX_1 60 122 IPR001356 GO:0003677
Phco4g00067 727 CDD homeodomain 61 119 IPR001356 GO:0003677
Phco4g00067 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 58 722 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00067 Phco-Chr4 428292 431506 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g00067 START 5.1e-53 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00067 4 428292 431506 Phco4g00067 4 428292 431506 ECH
Phco6g02667 6 48307454 48312120 Phco4g00067 4 428292 431506 ECH
Phco4g00067 4 428292 431506 Phco6g02667 6 48307454 48312120 PCT