Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00056 ATGCATTCCAAATCCATTCAATTGCTGCTTCTTTGCACTTTTGCTGCTTTTTTTTCGGATGTTGTATTTGGCGATCCTCCGTATAAAATTTGTTCTTCAAGCGGCAGCTATGGAAACGGCAGTTCCTTTGAAAACAATTTAAACAATCTGCTTTCATCTTTATCCTCCAATGCTTCAAACTCGAAATTCTATAATACTTCTTATGGGATTGCCCCTGACAGAGTTTATGGCCTCTACATGTGCCTCGACTATATTTCAAATGAATCTTGCCAGAAATGCATCACCACAGTAATAGAGGAAATTGTCAAACTGTGTCCTCAAACAAAAGAAGCAGTTGTGTGGGAAGAGTCCTGTCAGTTGCGTTATTCCAACAACAATTTCCTTGGTATGTTGAATGTCACGGGGAACATTGGCTTAGACAATGTACAGAATATTTCAGATTCAGAGAAGTTTGAGTCTGCTGTGAATGAGACACTAAGGAATCTTACTAAGGTGGCATCTTTTGATGTTTCCGCTAACATGTATGCTACTGGAGATGTTCCCTTTGAAGATGAAACAATATTTGCCTTAGTCCAGTGCACCAGAGATTTAACTGCAAATGATTGTAGTAGGTGCCTACAAAGTGCCATTGGAGATATACCAAGTTGTTGCTATGCCTCCATCGGGGGAAGAGTTCTGAGCCGTAGCTGTTATTTAAGGTATGAGTTTTATGCCTTCTATGATGGTGCAACAGGACCAACAGATTCTTCAACTGGCAAAAAAGAAAGCAAAAATAAATCAAGCAAAATATGGATGATTGCAGGAATTACAGTTGTGGTAGGCTTGGTCATAGTATTTTTCATTTTCGGACTGTATCTTGTCAGGAATAAAAGACATCGGCATGGTAAGAATGAAATAGACAATCATAACATCAGTCTTGGATCTCTTCGAGTGGCTACCAATAACTTTTCTGATTTGAATAAGCTTGGACAAGGGGGCTTTGGCCCTGTTTACAAGGGGAAACTTTGTGATGGCCAAGAAGTAGCAGTGAAGAGGTTGTCAGCTTGCTCCGAACAAGGCTCAGAGGAATTCATAAACGAGGTTCTTCTGATAATGAAACTTCAACACAAAAATCTTGTAAAGCTTCTTGGATTTTGTGTAGATGGAGAGGAGAAGCTTCTTGTGTATGAATTTTTACCCAATGGTAGTCTTGATGTCGTACTCTTTGATCCAAAGCAACGTGCACGACTAGATTGGAGCAAACGCCTGAATATCATAAATGGAATAGCAAGGGGGATACTTTATCTTCACGAAGATTCTCGACTGAAAGTGATTCATAGAGACCTAAAAGCAAGTAATGTGTTGTTGGACCGTGACATGAACGCAAAGATCTCAGACTTTGGAATGGCAAGGATATTTTCCGGAAATGAAGGTGAAGCTAACACTGCTACAATAGTTGGCACATATGGGTATATGGCTCCAGAGTATGCAATGGAGGGATTATATTCCATAAAATCTGATGTGTTTGGGTTTGGTGTGCTATTGCTTGAGATCATTACAGGGAAACGTAACGCGGGTTGCTATCACTCTAAAACCACTCCTAGCCTTCTATCATATGCGTGGAGTGTATGGAATGAGGGAAAGGTGATAGAACTAACTGATCCATTGTTGTTTGATTCATGCCCTGGAGATGAGTTTCTGAGATACATGCAGATTGGACTGCTATGTGTTCAAGAGGATGCATATGATAGGCCAACCATGTCTTCTGTTGTGATGATGCTGAAGAATGAATCAGCTACGCTTGCCCATCCAGAAAAACCACCTTTCTCTGTAAGGAGATTCAACTCTAATGACCCAGATTCCCAGGAATGCTCACTCAATTTCTTAACCATGTCAGATATATTGCCCCAGTAA 1893 0.4041 MHSKSIQLLLLCTFAAFFSDVVFGDPPYKICSSSGSYGNGSSFENNLNNLLSSLSSNASNSKFYNTSYGIAPDRVYGLYMCLDYISNESCQKCITTVIEEIVKLCPQTKEAVVWEESCQLRYSNNNFLGMLNVTGNIGLDNVQNISDSEKFESAVNETLRNLTKVASFDVSANMYATGDVPFEDETIFALVQCTRDLTANDCSRCLQSAIGDIPSCCYASIGGRVLSRSCYLRYEFYAFYDGATGPTDSSTGKKESKNKSSKIWMIAGITVVVGLVIVFFIFGLYLVRNKRHRHGKNEIDNHNISLGSLRVATNNFSDLNKLGQGGFGPVYKGKLCDGQEVAVKRLSACSEQGSEEFINEVLLIMKLQHKNLVKLLGFCVDGEEKLLVYEFLPNGSLDVVLFDPKQRARLDWSKRLNIINGIARGILYLHEDSRLKVIHRDLKASNVLLDRDMNAKISDFGMARIFSGNEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGCYHSKTTPSLLSYAWSVWNEGKVIELTDPLLFDSCPGDEFLRYMQIGLLCVQEDAYDRPTMSSVVMMLKNESATLAHPEKPPFSVRRFNSNDPDSQECSLNFLTMSDILPQ 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00056 630 Gene3D Transferase(Phosphotransferase) domain 1 392 599 - -
Phco4g00056 630 Pfam Protein tyrosine and serine/threonine kinase 320 586 IPR001245 GO:0004672|GO:0006468
Phco4g00056 630 ProSiteProfiles Gnk2-homologous domain profile. 25 127 IPR002902 -
Phco4g00056 630 Gene3D - 27 127 IPR038408 -
Phco4g00056 630 Gene3D - 137 239 IPR038408 -
Phco4g00056 630 ProSiteProfiles Protein kinase domain profile. 316 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00056 630 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 626 - -
Phco4g00056 630 SMART serkin_6 316 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00056 630 Pfam Salt stress response/antifungal 143 236 IPR002902 -
Phco4g00056 630 Pfam Salt stress response/antifungal 31 124 IPR002902 -
Phco4g00056 630 CDD STKc_IRAK 322 589 - -
Phco4g00056 630 FunFam Cysteine-rich receptor-like protein kinase 28 27 126 - -
Phco4g00056 630 Gene3D Phosphorylase Kinase; domain 1 285 391 - -
Phco4g00056 630 FunFam Liguleless narrow1 392 595 - -
Phco4g00056 630 SUPERFAMILY Protein kinase-like (PK-like) 301 618 IPR011009 -
Phco4g00056 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Phco4g00056 630 FunFam Cysteine-rich receptor-like protein kinase 10 287 391 - -
Phco4g00056 630 FunFam Cysteine-rich receptor-like protein kinase 10 136 239 - -
Phco4g00056 630 ProSiteProfiles Gnk2-homologous domain profile. 133 239 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00056 Phco-Chr4 356783 359262 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g00056 PK_Tyr_Ser-Thr 1.1e-48 CL0016