Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00054 ATGGTTAGGCACGTATCCATGGCTTCGCTCAAGCTTATGCTGCTGTTCTTCATTCTCAGCTTCCTCGACTTTAACACTTGCAAAGCACAGGAGCAGAGCACCGACCCCGTCTTTCTGTACCATAGCTGTTCAGGCGGCAACACCACCGCCAACAGTGCCTACCAACTAAACCTCGGCACCCTCCTCAGTTCCCTATCTTCCAACGCCTCCACAGAATTCTCCAACAACACTGTCGGAACATCCTCCTCCGACAGGGTGTACGGACTGTTCATGTGCAGGGGAGACGTGCCCTCTACGCTTTGTCACCAGTGCGTGTTCAACGCAACCCGACGTCTCCGCTCGGAGTGCTCTCTGGCCAAACAGGCCGTGATATGGTACGACGAGTGCACGGTTCGCTACTCCAACCGCTCTTTCTTCTCCACGGTGGACATTCGGCCGCGTATCGCACTCCTCAACACCGCCAACATATCCAACCAAGAAAGCTTCATGACCCTGCTTTTCAGAACCATAAACACAACCGCGGATGAGGCTGCCAACTTTCCCATGGGTGTGAAGAAATACGCGACGAAGGAGGCAACCATTTCTGGGTTTCAGTCTCTATACTGTTTGGCTCAGTGCACACCCGATCTGTCCCCGCGAGACTGCAGAAGTTGTCTCAGTGGTGTGATTGGAGACCTTCCTTGGTGTTGTCAGGGAAAGCAGGGAGGAAGGGTTCTCTATCCTAGCTGCAATGTTAGGTACGAACTCTACCCTTTCTACCGCCAGGCCACACCCGCGCCTTCACCTTCACCCTCACCGCCCCTACTTCCTCCTCCAACGTCCGCTAATTCCCAAGGAGGCGGTGGGATCTCAGCTGGGACCATTGTTGCGAATTTGGTTCCAATTTCGGTCGCCTTGCTTCTACTTATAGTGGGAATTTGTTTCTTGAGTAGAAGAGCCAGGAAGAAGCCGGGTTCTGTAATGGAAGGAAAAAATGTAGATGACATCACCACTGTGGAATCCTTGCAATTCGGTTTCAGCACGATTGAAGCCGCCACAAACAATTTCTCTGCCGACAACAAGCTGGGGGAGGGTGGATTTGGTGAGGTTTTCAAGGGCACTCTTCCGAGTGGACAAGAAATAGCTGTCAAGAGACTCTCCAAAAGCTCTAGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCCAAGCTCCAACATAGAAATTTAGTGAGGCTTCTCGGGTTTTGCTTGCAAGGAGAAGAGAAGATACTTGTTTATGAATATGTTCCCAACAAAAGTCTCGACTACACCCTCTTTGACCGTGAAAAGCAAAGTGAGTTGGATTGGAGGAGACGTTACAAGATTATTCAAGGGACTGCTCGAGGCATTCAATATCTTCACGAAGATTCTAGACTTAGAATTATACATCGAGATCTTAAAGCAAGTAATATATTGTTAGACAGTGATATGAATCCAAAAATCTCAGATTTTGGAATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACCGACAGAATTGTAGGGACTTATGGTTATATGGCTCCAGAATATGCAATGCATGGTGAGTTCTCTGTTAAGTCTGACGTGTACAGTTTTGGAGTCCTCCTTTTGGAGATCATAAGCGGCAAGAAGAATAGTTCTTTCTATCAAACAGATGGTGTTGAGGATCTACTGAGCTATGCGTGGCTACTTTGGAAGGATGGAACACCCTTGGAACTGATGGACCCCACGTTAAGAGAATCCTACGATCAGAATAAAATCATCAGAAGCATCCATATTGGTCTGCTCTGTGTCCAAGAAGATCCCGAATACAGACCTACAATGGCAACAATAGTTCTTATGCTAGCTAGTAACAGTGTTACTCTACCAACTCCTAAGCGGCCTGCATTTTTCATCCACCGTGGGACAGATGCAACCATGCCAAAAGGGCAGCAATTTGATCAGTCTATGACAATATCATTACCAATGACTATCAACGAGGTTTCCATTACCGAAATGGATCCTAGATAA 2025 0.4756 MVRHVSMASLKLMLLFFILSFLDFNTCKAQEQSTDPVFLYHSCSGGNTTANSAYQLNLGTLLSSLSSNASTEFSNNTVGTSSSDRVYGLFMCRGDVPSTLCHQCVFNATRRLRSECSLAKQAVIWYDECTVRYSNRSFFSTVDIRPRIALLNTANISNQESFMTLLFRTINTTADEAANFPMGVKKYATKEATISGFQSLYCLAQCTPDLSPRDCRSCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRQATPAPSPSPSPPLLPPPTSANSQGGGGISAGTIVANLVPISVALLLLIVGICFLSRRARKKPGSVMEGKNVDDITTVESLQFGFSTIEAATNNFSADNKLGEGGFGEVFKGTLPSGQEIAVKRLSKSSRQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYTLFDREKQSELDWRRRYKIIQGTARGIQYLHEDSRLRIIHRDLKASNILLDSDMNPKISDFGMARIFGVDQTQGNTDRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLLEIISGKKNSSFYQTDGVEDLLSYAWLLWKDGTPLELMDPTLRESYDQNKIIRSIHIGLLCVQEDPEYRPTMATIVLMLASNSVTLPTPKRPAFFIHRGTDATMPKGQQFDQSMTISLPMTINEVSITEMDPR 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00054 674 CDD STKc_IRAK 355 620 - -
Phco4g00054 674 Gene3D - 147 252 IPR038408 -
Phco4g00054 674 Gene3D - 35 138 IPR038408 -
Phco4g00054 674 ProSiteProfiles Gnk2-homologous domain profile. 144 252 IPR002902 -
Phco4g00054 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Phco4g00054 674 SMART serkin_6 349 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00054 674 ProSiteProfiles Protein kinase domain profile. 349 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00054 674 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 674 - -
Phco4g00054 674 Gene3D Transferase(Phosphotransferase) domain 1 425 628 - -
Phco4g00054 674 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 311 424 - -
Phco4g00054 674 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Phco4g00054 674 FunFam cysteine-rich receptor-like protein kinase 10 425 627 - -
Phco4g00054 674 ProSiteProfiles Gnk2-homologous domain profile. 36 138 IPR002902 -
Phco4g00054 674 Gene3D Phosphorylase Kinase; domain 1 314 424 - -
Phco4g00054 674 MobiDBLite consensus disorder prediction 258 273 - -
Phco4g00054 674 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 36 137 - -
Phco4g00054 674 MobiDBLite consensus disorder prediction 258 278 - -
Phco4g00054 674 Pfam Protein tyrosine and serine/threonine kinase 351 618 IPR001245 GO:0004672|GO:0006468
Phco4g00054 674 Pfam Salt stress response/antifungal 157 250 IPR002902 -
Phco4g00054 674 Pfam Salt stress response/antifungal 43 135 IPR002902 -
Phco4g00054 674 FunFam Cysteine-rich receptor-like protein kinase 25 146 252 - -
Phco4g00054 674 SUPERFAMILY Protein kinase-like (PK-like) 335 641 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00054 Phco-Chr4 346321 349934 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g00054 PK_Tyr_Ser-Thr 1.9e-49 CL0016