Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00052 ATGATAAGTATCTCCGAAAAGTCAAGGAGACTCACAGAAACTGCAAGAGGAGTGCTGAGAGGTAAGAGAGAGATGGTTAGGCACGTATCCATGGCTTCGCTCAAGCTTATGCTGCTGTTCTTCATTCTCAGCTTCCTCGACTTTAACACTTGCAAAGCACAGGAGCAGAGCACCGACCCCGTCTTTCTGTACCATAGCTGTTCAGGCGGCAACACCACCGCCAACAGTGCCTACCAACTAAACCTCGGCACCCTCCTCAGTTCCCTATCTTCCAACGCCTCCACAGAATTCTCCAACAACACTGTCGGAACATCCTCCTCCGACAGGGTGTACGGACTGTTCATGTGCAGGGGAGACGTGCCCTCTACGCTTTGTCACCAGTGCGTGTTGAACGCAACCCGACGTCTCCGCTCGGAGTGCTCTCTGGCCAAAGAGGCCGTGATATGGTACGACGAGTGCACGGTTCGCTACTCCAACCGCTCTTTCTTCTCCACGGTGGACATTCGGCCGCGTGTCGGACTCCTCAACAGCGCCAACATATCCAACCAAGAAAGCTTCATGACCCTGCTTTTCAGAACCATAAACACAACCGCGGATGAGGCTGCCAACTTTCCCATGGGTGTGAAGAAATACGCGACGAAGGGGGCCAACATTTCTGGGTTTCAGTCTCTATACTGTTTGGCTCAGTGCACACCCGATCTGTCCCCGCGAGACTGCAGAAGTTGTCTCAGTGGTGTGATTGGAGACCTTCCTTGGTGCTGTCAGGGAAAGCAGGGAGGAAGGGTTCTCTATCCTAGCTGCAATGTTAGGTACGAACTCTATCCTTTCTACCGCCAGGTCACACCCACGCCTTCACCTTCACCCTCACAGCCCCTACTTCCTCCTCCAACTTCCGCTAATTCCCAAGGAGGTGGTGGGATCTCAGCTGGGACCATTGTTGCGATTGTGGTTCCAATTACGGTCGCCGTGCTTCTATTTATAGTGGGAATTTGTTTCTTGAGTAGAAGAGTCAGGAAGAAGCGGGGTTCTGTAAAGGAAGGAAAAAATGCAGATGACATCACCACTGTGGAATCCTTGCAATTCAGTTTCGGCACGATTGAAGCCGCCACAAACAATTTCTCTGCGGACAACAAGCTGGGGGAGGGTGGATTTGGTGAGGTTTTCAAGGGCACTCTTCCGAGTGGACAAGAAATAGCTGTCAAGAGACTCTCCAAAAGCTCTGGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCTAAGCTCCAACATAGAAATTTAGTGAGGCTTCTCGGGTTTTGCTTGCAAGGAGAAGAGAAGATACTTGTTTATGAATATGTTCCCAACAAAAGTCTCGACTACACTCTCTTTGACCCTGAAAAGCAAAGTGAGTTGGATTGGAGGAGACGTTACAAGATTATTCAAGGGACTGCTCGAGGCATTCAATATCTTCACGAAGATTCTAGACTTAGAATTATACATAGAGATCTTAAAGCAAGTAATATATTGTTAGACAGTGATATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACCGACAGAATTGTAGGGACTTATGGTTATATGGCTCCAGAATATGCCATGCATGGAGAGTTCTCTGTTAAGTCTGACGTGTACAGTTTTGGAGTCCTCCTTTTGGAGATCATAAGCGGCAAGAAGAATAGCTCTTTCTATCAAACAGATGGTGCTGAGGATCTACTGAGCTATGCGTGGCTACTTTGGAAGGATGGAACACCTTTGGAACTGATGGACCCCATATTAAGAGAATCCTACAATCAGAATGAAATCATCAGAAGCATCCATATTGGTCTGCTCTGTGTCCAAGAAGATCCCGAAGACAGACCTACAATGGCAACAATAGTTCTTATGCTAGATAGTAACACTGTCACTCTACCAACTCCTAAGCGGCCTGCATTTTTCATCCACAGTGATACAACCATGCCAAAAGGGCAGCAATTTGATCAGTCTATGTCAAAATCATTACCAGTGTCGATCAACGAGGTTTCCATTAGCGAAATGGATCCTAGATAA 2091 0.473 MISISEKSRRLTETARGVLRGKREMVRHVSMASLKLMLLFFILSFLDFNTCKAQEQSTDPVFLYHSCSGGNTTANSAYQLNLGTLLSSLSSNASTEFSNNTVGTSSSDRVYGLFMCRGDVPSTLCHQCVLNATRRLRSECSLAKEAVIWYDECTVRYSNRSFFSTVDIRPRVGLLNSANISNQESFMTLLFRTINTTADEAANFPMGVKKYATKGANISGFQSLYCLAQCTPDLSPRDCRSCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRQVTPTPSPSPSQPLLPPPTSANSQGGGGISAGTIVAIVVPITVAVLLFIVGICFLSRRVRKKRGSVKEGKNADDITTVESLQFSFGTIEAATNNFSADNKLGEGGFGEVFKGTLPSGQEIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYTLFDPEKQSELDWRRRYKIIQGTARGIQYLHEDSRLRIIHRDLKASNILLDSDMNPKISDFGMARIFGVDQTQGNTDRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLLEIISGKKNSSFYQTDGAEDLLSYAWLLWKDGTPLELMDPILRESYNQNEIIRSIHIGLLCVQEDPEDRPTMATIVLMLDSNTVTLPTPKRPAFFIHSDTTMPKGQQFDQSMSKSLPVSINEVSISEMDPR 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00052 696 SUPERFAMILY Protein kinase-like (PK-like) 358 669 IPR011009 -
Phco4g00052 696 FunFam cysteine-rich receptor-like protein kinase 10 449 651 - -
Phco4g00052 696 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524
Phco4g00052 696 ProSiteProfiles Protein kinase domain profile. 373 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00052 696 MobiDBLite consensus disorder prediction 282 302 - -
Phco4g00052 696 FunFam Cysteine-rich receptor-like protein kinase 25 170 276 - -
Phco4g00052 696 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 696 - -
Phco4g00052 696 ProSiteProfiles Gnk2-homologous domain profile. 168 276 IPR002902 -
Phco4g00052 696 CDD STKc_IRAK 379 645 - -
Phco4g00052 696 Pfam Salt stress response/antifungal 67 159 IPR002902 -
Phco4g00052 696 Pfam Salt stress response/antifungal 181 274 IPR002902 -
Phco4g00052 696 SMART serkin_6 373 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00052 696 FunFam Cysteine-rich receptor-like protein kinase 10 335 448 - -
Phco4g00052 696 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 60 161 - -
Phco4g00052 696 Gene3D Transferase(Phosphotransferase) domain 1 449 652 - -
Phco4g00052 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Phco4g00052 696 Pfam Protein tyrosine and serine/threonine kinase 375 642 IPR001245 GO:0004672|GO:0006468
Phco4g00052 696 ProSiteProfiles Gnk2-homologous domain profile. 60 162 IPR002902 -
Phco4g00052 696 Gene3D Phosphorylase Kinase; domain 1 335 448 - -
Phco4g00052 696 Gene3D - 171 276 IPR038408 -
Phco4g00052 696 Gene3D - 59 162 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00052 Phco-Chr4 339454 342891 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco4g00052 PK_Tyr_Ser-Thr 3.6e-49 CL0016