Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00031 ATGGAAACTGGAGTTGAAGTTGGTGGAGAATGTGATGAAAAGTGTGGAGGGAACAAAAATCCAGTTACAGATAATGGTGTCTGTTATTATAGGCATCCAAAGAACAAGCAAATGGAGCCTATTGAGGAGATCTCCCAAGAATGGAGGAGTTGTCATAGTGAAGTGTACACAGAGGAGGAAGCTGAGTTCATGAACCAGCTGCTTGATAACTGCTCAATCCCAGAACAGTTCTTCTATGAACGTTTCAACATGGAAACAGAAGCTCCAAATGCAAATTCTATCTTCTTTTTACAAGGGAGTGAGCCCTGTGCTCATAGTACCAAATATATCTTTCCCACAACCAATGCTGCCAACTGCTCCAACAATTTGGGCCACGTGTCCCTTGGCTTTTCCTTACAAGGGAATCACCCCAAATTAATGAATGAAAATACTGACCAAGAGTTGGGTCTTGACACAGGGAGAGAGAATCTTGCTAATATGGATTTGCAGGCTCACAAGGCACGCCAAATATTAGTTTCTGAACCCGAAAAGGATAATACCAGAAGCATGGAGAAATCAGAAAAAAGGTTTAGGAGCTCATTTGAGGGCCCAGAGAACAACAGGAATGTGAAATCTAAGAAGAATCCAAAACCAGCTTCTTTGAGGAACACTGAAGAGGAAGCAAGTCCTGACCCTCAGAGTCAGACCTTATGCAGTTGTTCAGATGATGACTCCAAAGATTCTAGAGCGCTGAAGTTAAGTGGAAAATCAAGATCTAATAGAGACCCTGCACTTGATGCACAGAGCGCCTATGCAAGAAAGAGAAGAGAGAGAATAAATGAAAGGTTGAGAATTCTGCAAACACTAGTCCCGAATGGAACTAAGGTGGATATCAGCACAATGCTTGAGGAAGCTGTGCAACATGTGAAGTTTTTACAGCTTCAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTTCGCTCCCATTGCTTACAATGGAATGAGCATTGGCCCGGAACTTTTAACATCAGCATCACCAAGCAACCAAAGAAATGCATAG 1041 0.4246 METGVEVGGECDEKCGGNKNPVTDNGVCYYRHPKNKQMEPIEEISQEWRSCHSEVYTEEEAEFMNQLLDNCSIPEQFFYERFNMETEAPNANSIFFLQGSEPCAHSTKYIFPTTNAANCSNNLGHVSLGFSLQGNHPKLMNENTDQELGLDTGRENLANMDLQAHKARQILVSEPEKDNTRSMEKSEKRFRSSFEGPENNRNVKSKKNPKPASLRNTEEEASPDPQSQTLCSCSDDDSKDSRALKLSGKSRSNRDPALDAQSAYARKRRERINERLRILQTLVPNGTKVDISTMLEEAVQHVKFLQLQIKLLSSDDLWMFAPIAYNGMSIGPELLTSASPSNQRNA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00031 346 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 120 329 - -
Phco4g00031 346 CDD bHLH_AtIND_like 259 319 - -
Phco4g00031 346 MobiDBLite consensus disorder prediction 170 205 - -
Phco4g00031 346 SMART finulus 262 311 IPR011598 GO:0046983
Phco4g00031 346 Pfam Helix-loop-helix DNA-binding domain 266 306 IPR011598 GO:0046983
Phco4g00031 346 MobiDBLite consensus disorder prediction 170 265 - -
Phco4g00031 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 318 IPR036638 GO:0046983
Phco4g00031 346 Gene3D - 259 314 IPR036638 GO:0046983
Phco4g00031 346 MobiDBLite consensus disorder prediction 219 234 - -
Phco4g00031 346 FunFam Basic helix-loop-helix transcription factor 257 314 - -
Phco4g00031 346 MobiDBLite consensus disorder prediction 235 249 - -
Phco4g00031 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 305 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00031 Phco-Chr4 220651 222576 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g00031 HLH 2.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00031 4 220651 222576 Phco4g00031 4 220651 222576 ECH
Phco4g00031 4 220651 222576 Phco6g02754 6 48955293 48957080 PCT