Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00011 ATGGGAATGGAGGAAGAGGAAGATGAAATGGTGTGGTGTTCGTCTCATTCTTGTTCTTCTGATTCGGACGACGACAATATCGAAGAACGGAAATCGCAGAACGTGGATGCGTTGCTCAGGGGCAACCTCGTCGTGAAGAGACAATCGCTGCTACCGCGGCTTCTATCTGTATCGCAAGGGGCGGCTGTTTGTAGAAAACCCTTTAAACCTCCATCCTCCAAATCTCATACCTCCACTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCATGGGGTTCTTCCTCACCTATTCCTAGACCTGCGTTCCCCGACTTCCAACTCAATTCACCACTAACTGAGTCCCATGTTGATGTTCCTGTTTCTGAGGAGCTCAAACCATCTTTGCCCCCGGGGATCGACCCTTTAGTACTCTGGCACCCTCAAGACTCCCAGCATGACCCTTCTAATACTAATTTTACCACCATTACAGTTGACCCTTTGCTTGTTCGTTATCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGACTGTGTCTCGGGGCTGTGTACCACGCCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATACACTCTACTTTGTCAAGGGTTTGATGGCAAGCCGTTGGTTCGAAAATCCATCATAGTGACTCCTACCAGTCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTCGGTGAAAGAGTTCGTCTTGTTGCTTTATGCGAAAGTACAAGAGAAGATGTTGTCTCTGCGATCGACAGTTTTACAAGTCCCGAAAGAAATTTACAGGTTCTCATTGTTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGACGAGGCTCACAGATTGAAAAATGATCAAACAATAACAAACCGGGCATTGGCAGCCCTCCCGTGCAAACGTAGAATTTTATTGTCAGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAATCCTGGAATATTGGGCAGTATTGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTGCTGCCACTGCTGAAGAGAAGACGATAGGTGCTGAACGGTCTGCTGAATTAAGTGTCAATGTTAATCGGTTCATATTAAGAAGGACTAATGCATTGCTATCAAATCATTTGCCACCCAAGATAGTTGAGGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCCAAAAATGTTAAGAGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGACCTACATAACAGCTCTCAAAAAATTGTGCAATCATCCAAAGCTTATATATGATACTATACGAAGTGGGAGCCCAGGAACTTCGGGTTTTGAGGACTGTATCCGGTTCTTCCCGCCTGAAATGTTATCTGGAAGGTCTGGCTCGTGGACGGGAGGGCATGGAGCATGGGTTGAACTATCTGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCACAGAACAAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCATTTGAGGCTTGATGGCTCCACATCAATTAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGATCCATTTAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTTTATTTATAGATTTTTGAGTGCTGGAACAATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAGACTTGAGTCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGACAACATCAAGTCTGAGATTCATGAAAAGATGCAATGCAGTCGGTGTCAAATACATGATGGTCCTCGAAGCACTGATGCTCAATCAACAGCAGATAATGAATCTGGCGAAGAAACCTCTGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTGAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAAGATTTAGGAAGTTGGGGCCATCATTTTTTACCAAATTCTGTACCAGATGCCATCCTTCAGGCTTCAGCCGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTAACGGACGACTGGTACCCATCGAGTCTATGACGAGTCCCAAGTTACAGCAAAAGGAACCAAATAAGGGATTACTGAAATCAGTGGCCACTCCTTTTTCTTTGCATAACAGATTACCGCTGCAGTCTGCTTCTGGTGTTGCTAGTATGTCATCATCATCCACTTCCAATGTAAATTCTGTGGGGATTACCAGAAACATGTCCAATGTGGCATTTAAGACCGACTGCTCTCTTGTTAGTAAAGTATTACCACACAAAAGATCATATCCTGCTAATATCAATCATCATAATTTTGAGTGA 2709 0.4278 MGMEEEEDEMVWCSSHSCSSDSDDDNIEERKSQNVDALLRGNLVVKRQSLLPRLLSVSQGAAVCRKPFKPPSSKSHTSTYNQDLTRRLSARKRFVPWGSSSPIPRPAFPDFQLNSPLTESHVDVPVSEELKPSLPPGIDPLVLWHPQDSQHDPSNTNFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPLVRKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESTREDVVSAIDSFTSPERNLQVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPAATAEEKTIGAERSAELSVNVNRFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILTYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRHRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNDPFKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDRLESQGNFLSTEDLRDLFTFHDNIKSEIHEKMQCSRCQIHDGPRSTDAQSTADNESGEETSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFLPNSVPDAILQASAGDEVTFVFTNQVNGRLVPIESMTSPKLQQKEPNKGLLKSVATPFSLHNRLPLQSASGVASMSSSSTSNVNSVGITRNMSNVAFKTDCSLVSKVLPHKRSYPANINHHNFE 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00011 902 PANTHER SNF2/RAD54 FAMILY MEMBER 48 800 - -
Phco4g00011 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 412 IPR027417 -
Phco4g00011 902 FunFam Predicted protein 434 508 - -
Phco4g00011 902 Pfam SNF2-related domain 174 480 IPR000330 GO:0005524|GO:0140658
Phco4g00011 902 Gene3D - 412 719 IPR027417 -
Phco4g00011 902 SMART helicmild6 556 640 IPR001650 -
Phco4g00011 902 SMART ultradead3 167 370 IPR014001 -
Phco4g00011 902 MobiDBLite consensus disorder prediction 1 29 - -
Phco4g00011 902 CDD SF2_C_SNF 523 651 - -
Phco4g00011 902 CDD DEXHc_RAD54 171 412 - -
Phco4g00011 902 FunFam DNA repair and recombination protein RAD54 140 411 - -
Phco4g00011 902 MobiDBLite consensus disorder prediction 719 738 - -
Phco4g00011 902 Pfam Helicase conserved C-terminal domain 531 639 IPR001650 -
Phco4g00011 902 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 686 IPR001650 -
Phco4g00011 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 798 IPR027417 -
Phco4g00011 902 Gene3D - 143 411 IPR038718 -
Phco4g00011 902 Gene3D - 434 703 - -
Phco4g00011 902 FunFam DNA repair and recombination protein RAD54-like 517 692 - -
Phco4g00011 902 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 362 IPR014001 -
Phco4g00011 902 MobiDBLite consensus disorder prediction 719 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00011 Phco-Chr4 111468 119891 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco4g00011 SNF2_N 2e-53 CL0023