Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03272 ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGGTCGTAGAAGCTCGGAACCACCGTCTTCGGGGGGGAGGTACGTCAAGACTCGCGCTGCAGTTGCCAGGGAAGCGGCGGCGGCGGAGAGGCCGAGGACTCGTTTGGCGGCGAAACAATCAGAAGAGGAGAAGCCGGTCATTGTTATATCCGATCATACGAAGAAGGAAGTTGAAGGCGGCGCGATGGCGGATGAGAGTGGTGGCCTGAGTGCAAACAAGGGTGCTGCGCCAGAAGATGATGCTAACCCAGCTCCTTTCCCTGATAGGGTTCAAGTAGGAGGGTCGCCTGTCTACAAAGTGGACAGGAAACTCGGCAAAGGAGGATTTGGACAGGTTTTTGTTGGCCGGCGAGTAACCGGTGGTAACGATCGTACCGCTGGTCCTGGTGCCACTGAGGTGGCTTTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAACTATGGCCCCCCTTATGAGTGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTATAAGGCGAGGCAAGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCCAGCTTGTGGGACGTTTGGAATTCCTCAAGCCAGGCGATGTCTGCAGAAATGGTTTCCTGCATTGCAGTGGAGTCCCTGTCAATCTTGGAGAAGATGCACTCTAGAGGCTATGTGCATGGTGATGTGAAGCCGGAGAACTTTTTACTAGGTCAGCCGTCTACGCCACAAGAAAAAAAACTGTATCTTGTAGACCTGGGATTAGCTACGAAGTGGAGAGACACCTCCAGTGGGCTGCATGTTGAATATGATCAACGTCCTGATATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGACGATCTTGAATCTCTTGCGTATACACTCATTTTCCTTCATAAGGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGCTATGCTGTTTCTGCCCAGCTCCTTTTAGGCAGTTCCTTGAGGTTGTAGTGAACATGAAATTTGATGAAGAACCTAACTATGCTAAGTTAATTTCTCTGTTTGATGGTATGCTTGGACCAAATCCCGCATTGAGGCCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAGGAAGAAGATGATTCACAGCCCAAAAAGAAGGTCCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACAGCCAATGAAGCAAAGGTATCATTATAATGTAGCGGATGCAAGATTAGCACAACATGTGGAGAGAGGGATTGCAGATGGCCTCCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGTTTTTCCAGTCAAGTTTATAAGTTGTCACCGTTTTTCTTACATAAGGAATGGATCATGGAGCAGTGGGAAAAAAACTTTTACATTACTTCTATTGCAGGAGCTAATAATGGGAGCTCTCTTGTTGTGATGTCAAAAGGCACACACTATACACAACAATCATACAAAGTAAGTGATTCATTCCCATTTAAATGGATAAACAAAAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATTCTGGATACACTGATCAGGTTATTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGAAGATGGGATAATGGTTACAGGATTACAGCAACTGCTGCGACATGGGATCAATCTGCTCTGATACTGAGCATTCCTAGGCGCAGGCCAGGTGATGAAACCCAGGAAACTCTGCGCACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGACGCACAGTATGCTGA 2028 0.4655 MPELRSGPRRRRAPVGRRSSEPPSSGGRYVKTRAAVAREAAAAERPRTRLAAKQSEEEKPVIVISDHTKKEVEGGAMADESGGLSANKGAAPEDDANPAPFPDRVQVGGSPVYKVDRKLGKGGFGQVFVGRRVTGGNDRTAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKARQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPSTPQEKKLYLVDLGLATKWRDTSSGLHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEVVVNMKFDEEPNYAKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARQPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNFYITSIAGANNGSSLVVMSKGTHYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNSGYTDQVIELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03272 675 SMART serkin_6 113 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03272 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Phco3g03272 675 Gene3D Transferase(Phosphotransferase) domain 1 86 434 - -
Phco3g03272 675 MobiDBLite consensus disorder prediction 1 17 - -
Phco3g03272 675 MobiDBLite consensus disorder prediction 1 108 - -
Phco3g03272 675 SUPERFAMILY Protein kinase-like (PK-like) 113 396 IPR011009 -
Phco3g03272 675 ProSitePatterns Protein kinases ATP-binding region signature. 119 151 IPR017441 GO:0005524
Phco3g03272 675 MobiDBLite consensus disorder prediction 38 76 - -
Phco3g03272 675 CDD STKc_CK1 113 388 - -
Phco3g03272 675 Pfam Protein kinase domain 113 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03272 675 ProSiteProfiles Protein kinase domain profile. 113 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03272 675 FunFam casein kinase 1-like protein HD16 86 431 - -
Phco3g03272 675 PANTHER CASEIN KINASE-RELATED 113 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03272 Phco-Chr3 58423424 58432643 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Phco3g03272 Pkinase 7.5e-18 CL0016