Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03173 ATGTTACCCAATTCTGTGTTGATACCTTCTTGTTCAATGTCTCGGTATCTTCAAGATGATAGAGAGGGAGGCAATTTCAATCTACCATTGGATTGCAATAACAATTCAGTTCCATCAAATTTGCTCACAAATTCCATGTCCATGTCCCCTTATGTGATGCCTCAATTTTCTCAAGACAGAGAGGGAAGTAATTGCAATCAAGCTATGGATTTCCGCAGTAATTCAATTTCATCAAATCAGGTGTCAAATTCTCTGTCAGTGCCCTCTTGTCCTATACTTCATTATCATCAAGAAAAAGATAGAGAGCGGAGAAACACTTTCAATCTACCATTGGATTTCAAAGGTAATTCATCTTCAACAAATGTGTTATCAAACTCCATGTCAATACCCTCATATCCAATGCCTCAATATTATCCAGAAAGCATGCAGGAGGGGAAACTCCGATCCTTCTGGGAGAAGCAGTTGTTGGATATTCAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATCATGAAAACAGACGCAGATGTGCAGATGGTCAGTGCTGAAACTCCCATGCTGATGTCAAAAGCGTGTGAGATTTTCATCCAGGAGCTCACTTTTCGTGCATGGATGCGTGCTGAAGAGAGCAACAAGAGTACTGTGCAGCCATGTGACGTTGCCAAGGTTATTATGCAAAATGATGCCTTGCATTTCCTCACTGATATTGTCCCAGATAATCTCCAAAATTTCTGTGCTTATGGTGCTGCTGAGGAAGAGCACGCTGCTGGAAACATTGCAGAAGGAAGGCATTCAAGCCAAAGTGCCCTGCCTGACACAGCTGGTTTTAGAAATCCTATGAATATGATGAACATCAGCAGAGGCTCGGGGGCAGGAAACCAAGTGATTCCTCAACCCAACAACAACAGCATGATGCAGCCTCCCTTTGTTAAGCCTTCAGATCAATTGCCTTACAATTTTCATCCCAAGGTAAAATTAACAAAGAGCTGGGAATGGGAGATTGAAGCAATCAGAATTTGTGGGAATGGGCTGATTGGGAAGCAATGA 1071 0.4267 MLPNSVLIPSCSMSRYLQDDREGGNFNLPLDCNNNSVPSNLLTNSMSMSPYVMPQFSQDREGSNCNQAMDFRSNSISSNQVSNSLSVPSCPILHYHQEKDRERRNTFNLPLDFKGNSSSTNVLSNSMSIPSYPMPQYYPESMQEGKLRSFWEKQLLDIQAAEAFKSQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTFRAWMRAEESNKSTVQPCDVAKVIMQNDALHFLTDIVPDNLQNFCAYGAAEEEHAAGNIAEGRHSSQSALPDTAGFRNPMNMMNISRGSGAGNQVIPQPNNNSMMQPPFVKPSDQLPYNFHPKVKLTKSWEWEIEAIRICGNGLIGKQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03173 356 FunFam Nuclear transcription factor Y subunit C 135 247 - -
Phco3g03173 356 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 169 231 IPR003958 -
Phco3g03173 356 Gene3D Histone, subunit A 135 247 IPR009072 GO:0046982
Phco3g03173 356 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 143 259 - -
Phco3g03173 356 SUPERFAMILY Histone-fold 143 241 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03173 Phco-Chr3 57530302 57535160 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phco3g03173 CBFD_NFYB_HMF 1.1e-14 CL0012