Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03110 ATGATGAAGAGAGAAAGAGAGGTTGACAGTGTAAGCATGGCGAATTGTTTGATGTTGCTTTCTCGTGGAGGTGAATTTGAGGCCACATACTCAAGCTCTTCTTCTATGAGTAACCGTGTCTTTGAATGCAAGACATGCAATAGACAATTCCCTTCATTTCAAGCACTTGGAGGGCACAGGGCTAGTCACAAGAAACCTAGGTTGATGGCAGCAGGAGATAATACTGAAGGACAATTGCTTCATGATTCACCTGCAAAGCCTAAGACTCATGAGTGCTCCATTTGTGGATTGGAGTTTGCTATAGGCCAAGCCTTGGGAGGCCACATGAGGAGACACAGACCTGCAAATTTGAACAATTCCACCACTATCAGCAGCAGTAGTGGTGGTAGCAGTGTTGATTCTTCAACCAAGAACAACAAGAGATCAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGATTTTGAAGATAAGAAAACCAACTACTTTGGTTGATTATTTGTATTAG 522 0.4195 MMKREREVDSVSMANCLMLLSRGGEFEATYSSSSSMSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAAGDNTEGQLLHDSPAKPKTHECSICGLEFAIGQALGGHMRRHRPANLNNSTTISSSSGGSSVDSSTKNNKRSVLVLDLNLTPFENDLEILKIRKPTTLVDYLY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03110 173 SMART c2h2final6 41 63 IPR013087 -
Phco3g03110 173 SMART c2h2final6 90 112 IPR013087 -
Phco3g03110 173 Gene3D Classic Zinc Finger 38 112 - -
Phco3g03110 173 PANTHER ZINC FINGER PROTEIN ZAT5 6 155 - -
Phco3g03110 173 Pfam C2H2-type zinc finger 90 114 - -
Phco3g03110 173 Pfam C2H2-type zinc finger 40 66 - -
Phco3g03110 173 SUPERFAMILY beta-beta-alpha zinc fingers 39 112 IPR036236 -
Phco3g03110 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Phco3g03110 173 MobiDBLite consensus disorder prediction 110 137 - -
Phco3g03110 173 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Phco3g03110 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Phco3g03110 173 MobiDBLite consensus disorder prediction 114 137 - -
Phco3g03110 173 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03110 Phco-Chr3 57105132 57105653 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco3g03110 zf-C2H2_6 1.3e-09 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g03110 3 57105132 57105653 Phco3g03110 3 57105132 57105653 ECH