Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03097 ATGGCTTCTTCACTCCCTCGGAGAAGAACCCACGCTCCCAAATCCTCCTCCGCCCTAATTGACGACGTTTTCTGCCAGGAATGCGGCTCCGGCCACTCTCCGGCGAAGTTGCTTCTCTGCGACAAATGCGATCGAGGTTACCACCTCTTCTGCCTCCGCCCCGTCCTCCCTACCGTCCCCAAAGGCTCCTGGTTCTGCCGCTCCTGCTCCAACCACAAGCCTAAGTCTTTCCCCCTTGTGCAGACCAAAATAATTGACTTCTTTCGAATTCAACGCTCCCCCGAGGCATCGCTGAATCAAGATGCGCGGAAGAAGCGAAAGCGGGGTGGTACCTTGGTGGTGTCGAAGAGGAAACGGAAACTATTGCCGTTCGTGCCGAGTGAGGACCCAAAGAGGAGGTTGGAGCAGATGGCGTCGCTGGCGACGGCTTTGACTGCAACTAGTACTGAGTTCAGCAACAAGCTCACTTACATGCCTGGAATGGCACCGAGGTCTGCTAATTGCCCTGGTCTCGAGCGTGGTGGAATGCAGATCTTGTCAAAAGAAGACACTGACACCTTAAACTTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCACCTCTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTTGAAGCAGATAGATCCATCAAGGATTTAACCATAATCACAGAATATGTTGGAGATGTAGATTTTTTAAAGAATAGGGAAAATGATGACGGAGATAGCATAATGACACTTCTTTCAGCGTCTGATCCTTCAAAAACACTTGTGATCTGTCCAGACAAACGAAGCAATATAGCACGTTTCATTAATGGCATCAATAACCATACACCGGAAGGAAAAAAAAAACAAAACTTAAAATGCGTGAGATTTGACGTTGGAGGCGAATGTCGAGTTCTTTTAGTTTCCAATAGAGATATCACAAAGGGGGAAAGGTTGTATTATGACTACAATGGAGATGAACATGAGTATCCAACTGAACATTTTGTCTGA 1005 0.4736 MASSLPRRRTHAPKSSSALIDDVFCQECGSGHSPAKLLLCDKCDRGYHLFCLRPVLPTVPKGSWFCRSCSNHKPKSFPLVQTKIIDFFRIQRSPEASLNQDARKKRKRGGTLVVSKRKRKLLPFVPSEDPKRRLEQMASLATALTATSTEFSNKLTYMPGMAPRSANCPGLERGGMQILSKEDTDTLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLVSNRDITKGERLYYDYNGDEHEYPTEHFV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03097 334 CDD PHD_RSF1 25 69 - -
Phco3g03097 334 ProSiteProfiles SET domain profile. 200 322 IPR001214 GO:0005515
Phco3g03097 334 SUPERFAMILY FYVE/PHD zinc finger 16 76 IPR011011 -
Phco3g03097 334 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Phco3g03097 334 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Phco3g03097 334 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 98 332 - -
Phco3g03097 334 FunFam Histone-lysine N-methyltransferase ATXR5 105 334 - -
Phco3g03097 334 CDD SET_ATXR5_6-like 197 334 - -
Phco3g03097 334 Pfam PHD-finger 24 71 IPR019787 -
Phco3g03097 334 SUPERFAMILY SET domain 192 325 IPR046341 -
Phco3g03097 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Phco3g03097 334 SMART PHD_3 24 70 IPR001965 -
Phco3g03097 334 Gene3D SET domain 106 334 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03097 Phco-Chr3 57008042 57010158 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco3g03097 PHD 1.4e-11 CL0390