Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03075 ATGACTCCACCAGCCCCATCAAGAGGAAGAAGAACAAGAATGACTATTTTTCAGTTTCACTCGAGAGTTCTGAGTTTGCTGATTTCAGTTTCATCTTTGCTGACATGCTTAGGAAACAATGACGTGCCTGTCCAGTTGAATGATGATGTTCTTGGGTTGATTGTGTTCAAATCAGACCTTCAAGACCCTTCTTCTTATCTTGCTTCGTGGAATGAAGACGATGTCAATCCATGTTCATGGCAGTTCGTGCAGTGCAATCCTGAGAGTGGAAGAGTTTCTGAGGTCTCATTGGATGGCTTGGGATTATCTGGGAAGATTGGAAGAGGGCTTGAGAAGTTGCAGCATCTTACGGTATTGTCCCTTTCTCATAACAACTTGAGTGGGGGTATTAGTCCATCTCTTACTCTTTCCAATACTCTTGAGAGGCTGAACCTTAGCCACAATGCTCTTTCTGGCTCAATTCCTACTTCTTTTGTGAATATGAATTCAATAAAGTTTCTTGATCTTTCAGAGAATTCATTCTCGGGATCAATCCCTGAGACTTTTTTTGACACTTGTTCTTCCCTTCATCACATTTCTCTGGCTGGGAACATGTTTGATGGGACGATTCCTGGCTCACTGTCTAGATGTTCCTCGTTGAATAACCTTAATCTTTCCAATAATCATTTATCTGGTAATGTGGACTTTAATGGGATTTGGTCACTGACCAGGCTTAGAACTTTGGATCTATCCAACAATGCCTTATCTGGGTCTTTACCTGGTGGAATTTCATCCATACATAACTTGAAGGAGATCTTACTACGAGGTAACCAGTTTTCAGGTCCTTTATCCACTGATATTGGATTCTGCCTACATCTAAGTAGGTTGGATTTTAGTGATAACCAGTTCAGTGGAGAACTACCTGATTCACTTGGAAGGCTTAGTTCTTTGAGCTATTTCAAGGCATCAAATAATTTTTTCACCAGCGAATTCCCTCGATGGATTGGTAATCTTACCAGTCTGGAGTACCTAGAGCTCTCAAACAATCAGTTCACTGGAAGCATCCCACAGTCAATAGGGGAACTGGGATCACTCTCTCATCTGAGCATTTCAAGTAACAAGCTTGTTGGAACTATTCCATCATCATTAAGTTCCTGCACAAAGTTATCTGTAATCCAGCTAAGAGGCAATGGTTTCAGTGGCACCATTCCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATAGACTTGTCCCGAAATGAACTGAGTGGCTCAATTCCAGCAGGATCAAGCAGGCTCTTGGAAACTCTAACCAACTTGGATCTTTCAGATAACCATCTCCAAGGGAATATCCCTGCAGAAACTGGTCTTCTTTCAAAACTAAGTTATTTGAATCTGTCTTGGAATGATCTTCAATCACAGATGCCTCCAGAATTTGGTCTCCTTCAGAATCTAGCAGTTTTGGATATTCGCAACAGTGCCTTGCGTGGTTCAATTCCAGCAGATATATGCGACTCAGGCAATTTAGCTGTGCTGCAACTGGATGGAAATTCATTGCAAGGGAATATTCCAGAATGGATTGGGAATTGTAGCTCTCTTTACTTGCTGAGTTTGTCTCACAATAACTTGACTGGTTCAATTCCAAAGTCCATGTCAAAGCTAAACAAGCTGAAAATCCTCAAACTGGAATCCAATGAGCTAAGCGGAGAGATACCAATGGAGCTTGGAATGCTTCAGAGTCTACTTGCTGTGAACATATCATACAACAGGCTCACAGGAAGACTTCCCACAGGTAGCATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTGGGTCTATGCTCACCCTTGTTGGAGGGTCCTTGTAAGATGAATGTCCCCAAGCCACTAGTGCTTGACCCAAATGCCTACAACAACCAAATAAGCCCTCAAAGGCAAAGAAACGAATCATCCGAGTCTGGACCGGTCCACCGCCACAGGTTCCTTAGTGTATCTGCTATTGTAGCGATATCTGCATCCTTTGTCATTGTATTAGGAGTGATTGCAGTTAGCCTACTTAATGTTTCTGTGAGAAGAAGACTATCATTTGTGGATAATGCTTTGGAAAGCATGTGCTCAAGCTCTTCAAGATCAGGGAGTCCAGCCACAGGAAAGCTGATTCTGTTTGATTCCCAGTCCTCACCTGACTGGATCAGCAGTCCTGAGTCCTTGCTCAACAAGGCATCAGAGATTGGAGAAGGAGTGTTTGGAACCCTCTACAAGGTTCCATTGGGATCACAGGGTAGAATGGTAGCAATCAAGAAGCTTATATCCACCAACATAATCCAACATCCAGAAGACTTTGATAGGGAGGTTAGAATCCTAGGGAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGGTACTATTGGACTCCTCAACTACAGCTTTTAGTAACTGAGTTTGCGCCAAATGGTAGCTTGCAGGCCAAGCTACATGAGAGGCTTCCCTCGAGTCCACCTCTTTCTTGGCCAATAAGGTTCAAAATTTTGCTTGGAACAGCAAAGGGGCTTGCTCATTTGCACCATTCTTTCCGTCCACCAATCATCCACTACAACATAAAGCCAAGTAACATTCTGCTTGACGAAAATTGCAACCCCAAGATCTCGGATTTCGGGTTAGCTCGGCTTCTGACAAAGCTAGACAGGCATGTGATGAGCAATAGGTTTCAGAGTGCATTAGGATATGTGGCACCAGAATTAGCATGTCAGAGCCTAAGGGTGAATGAGAAATGTGATGTTTATGGTTTTGGGGTGATGATCCTTGAGCTGGTGACAGGTAGGAGGCCAGTGGAGTACGGTGAAGACAATGTGCTTATACTGAATGACCATGTGAGGGTGCTGCTTGAGCAGGGTAATGTGTTGGAGTGTGTGGATCACAGTATGAATGAGTACCCAGAAGATGAGGTATTGCCTGTTCTAAAGCTAGCAATGGTATGCACCTCCCAAATTCCTTCTAGCAGGCCAACTATGTCTGAAGTGGTGCAAATACTGCAGGTCATTAAAACCCCAGTTCCTCAAAGGATGGAAGTGTTTTGA 3063 0.4339 MTPPAPSRGRRTRMTIFQFHSRVLSLLISVSSLLTCLGNNDVPVQLNDDVLGLIVFKSDLQDPSSYLASWNEDDVNPCSWQFVQCNPESGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLSGGISPSLTLSNTLERLNLSHNALSGSIPTSFVNMNSIKFLDLSENSFSGSIPETFFDTCSSLHHISLAGNMFDGTIPGSLSRCSSLNNLNLSNNHLSGNVDFNGIWSLTRLRTLDLSNNALSGSLPGGISSIHNLKEILLRGNQFSGPLSTDIGFCLHLSRLDFSDNQFSGELPDSLGRLSSLSYFKASNNFFTSEFPRWIGNLTSLEYLELSNNQFTGSIPQSIGELGSLSHLSISSNKLVGTIPSSLSSCTKLSVIQLRGNGFSGTIPEGLFGLGLEEIDLSRNELSGSIPAGSSRLLETLTNLDLSDNHLQGNIPAETGLLSKLSYLNLSWNDLQSQMPPEFGLLQNLAVLDIRNSALRGSIPADICDSGNLAVLQLDGNSLQGNIPEWIGNCSSLYLLSLSHNNLTGSIPKSMSKLNKLKILKLESNELSGEIPMELGMLQSLLAVNISYNRLTGRLPTGSIFQNLDKSSLEGNLGLCSPLLEGPCKMNVPKPLVLDPNAYNNQISPQRQRNESSESGPVHRHRFLSVSAIVAISASFVIVLGVIAVSLLNVSVRRRLSFVDNALESMCSSSSRSGSPATGKLILFDSQSSPDWISSPESLLNKASEIGEGVFGTLYKVPLGSQGRMVAIKKLISTNIIQHPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVTEFAPNGSLQAKLHERLPSSPPLSWPIRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENCNPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEQGNVLECVDHSMNEYPEDEVLPVLKLAMVCTSQIPSSRPTMSEVVQILQVIKTPVPQRMEVF 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03075 1020 Gene3D Ribonuclease Inhibitor 333 620 IPR032675 -
Phco3g03075 1020 CDD STKc_IRAK 739 1007 - -
Phco3g03075 1020 Pfam Leucine rich repeat 115 173 IPR001611 GO:0005515
Phco3g03075 1020 Pfam Leucine rich repeat 501 560 IPR001611 GO:0005515
Phco3g03075 1020 Pfam Leucine rich repeat 316 368 IPR001611 GO:0005515
Phco3g03075 1020 ProSiteProfiles Protein kinase domain profile. 733 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03075 1020 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 46 206 - -
Phco3g03075 1020 Gene3D Transferase(Phosphotransferase) domain 1 815 1017 - -
Phco3g03075 1020 PRINTS Leucine-rich repeat signature 238 251 - -
Phco3g03075 1020 PRINTS Leucine-rich repeat signature 427 440 - -
Phco3g03075 1020 SMART LRR_typ_2 355 379 IPR003591 -
Phco3g03075 1020 SMART LRR_typ_2 331 354 IPR003591 -
Phco3g03075 1020 SMART LRR_typ_2 451 474 IPR003591 -
Phco3g03075 1020 SMART LRR_typ_2 235 258 IPR003591 -
Phco3g03075 1020 SMART LRR_typ_2 161 185 IPR003591 -
Phco3g03075 1020 SMART LRR_typ_2 475 499 IPR003591 -
Phco3g03075 1020 SMART LRR_typ_2 113 137 IPR003591 -
Phco3g03075 1020 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 207 301 - -
Phco3g03075 1020 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 727 810 - -
Phco3g03075 1020 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 811 1015 - -
Phco3g03075 1020 ProSiteProfiles Leucine-rich repeat profile. 429 451 IPR001611 GO:0005515
Phco3g03075 1020 Gene3D Phosphorylase Kinase; domain 1 733 814 - -
Phco3g03075 1020 Pfam Protein kinase domain 735 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03075 1020 Gene3D Ribonuclease Inhibitor 49 203 IPR032675 -
Phco3g03075 1020 SUPERFAMILY L domain-like 63 320 - -
Phco3g03075 1020 SUPERFAMILY Protein kinase-like (PK-like) 736 1014 IPR011009 -
Phco3g03075 1020 ProSitePatterns Protein kinases ATP-binding region signature. 739 763 IPR017441 GO:0005524
Phco3g03075 1020 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Phco3g03075 1020 SMART LRR_sd22_2 113 132 - -
Phco3g03075 1020 SMART LRR_sd22_2 331 357 - -
Phco3g03075 1020 SMART LRR_sd22_2 235 264 - -
Phco3g03075 1020 SMART LRR_sd22_2 427 459 - -
Phco3g03075 1020 Gene3D Ribonuclease Inhibitor 204 324 IPR032675 -
Phco3g03075 1020 SUPERFAMILY RNI-like 241 590 - -
Phco3g03075 1020 PANTHER OS05G0588300 PROTEIN 351 472 - -
Phco3g03075 1020 FunFam Inactive leucine-rich repeat receptor-like protein kinase 328 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03075 Phco-Chr3 56879406 56882554 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Phco3g03075 Pkinase 1.7e-42 CL0016