Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03062 ATGGCAGCGGCGTTCCAGGAAGGTGGCGGTGGCGACGAGGACGCCACCATCGACGTGCACACCACGCGTGGCACTCCCATCCGGTACCTTCCCCTTGACCACCTCTACTCTGCAACGTCGCCTTGCCGCGTCACGGCCAGCGGATCCTCCAACGTCATGTCCAAGAAGGTCAAGGCTAGAAAACTCACCGCGCTCGCGGCGCATCACCATTTCAACAACCTCGACCACAAGAAAGCGACGTCGTCCTCATCGTCCTCCTCCCAGCCTCCTTCTTCCAAGCCTCCCCTGCTCTTCGTCTACTCGCGTCGGCGCAAGAGGCATTCCCCTTCCACGGCGCCGTTTTACGATTCGCTGTGCAAAACCGAGGGCGAGGTGAATGCGGACGAGAATGAGAATGAGAAAAGGCTGCTGAAGAAGAGGAAAATTGGGAGCACTGAGCTGGAGAGACTGGGCGTGGATTTGAACACTGCGATTGGGGATGTTGACGGACCTCGATTGAGGGAATGCCGAAACCAATTCGGGAATTCTGGTGCTGCTGGGAATTTTAAGTGTGGTTCCTTGGAGAATTTGCCGAAAGGGTCGCCTGATTCTCGTCCTGTGAAGAAATGGATCGGGTTGAGTTTTGATAATGCTGATCCTGAGGTGTTTATTGGATTACGTTGCAAGGTTTATTGGCCCATGGATTTGAAAGCGTATACTGGTTATGTCAGAAGTTATGACAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGAGATGAGGAAAATTTAATTCTTTCAAATGAAAATATAAGATTCCATGTTTCCCGTGATGAGGTGAAACATTTAAAATTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAGGAGATGCTTGCAATGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCTAAGCTAACAGGCCATGCTATGTGGCCGGCTGTTGTTTTGGATGAATCACTTGCTAGAAACTGTAAGGGTTTAAAGATGATTTTGGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGAGTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTAAGTGAACAAAAACTTCCTTTGGAGATGATAGAGTTGCAGAAAAGATGTACAGCTGATAATTGTAACAATGTAAGTGGAGAGGATGGAGGATGTACAGATTCAGGTGACGAATGTTTAAATGGCGAGAGGACTTTAATGGCTCTGGAAAACGTTGAAACTTTTCCTTACGAAGTAGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTAAAGATTCTGCATTCAGGGATGGAAGATTCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCAGTTACTGACCCAGAAGTTTTTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTTCGTCCTCTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTAATACTCCATCTGCTTGTTGGAGCGAGGTATTCAAAAAGATAAAAAAAATGGAAAAGAATGCTTCTGAAGGCACTCTTGCTGAAGGTGGGGTAGAAAAGGGCTATGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAGGTGCTTAAACTTATAAAGGGATTGTCTAAATCGAAAATCTCTTCAAAGAATTCATTTTGCAAGTTAGGTTCCCAAAGACATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTCGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAGTGCAGAATGATGGTCCACGCTAGATGTTATGGAGAACTAGAACCTGTTAATGGGGTGCTATGGTTATGCAACTTATGTCGTTCAGGAGCTCCACCTCCACCTTGCTGCTTATGTCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGGTGGGCTCATTTGGCTTGTGCTATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGCAAGGACCGCTGGAAGTTGCTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAATAGTTCTTGTCGAGTAGCATATCATCCACTCTGTGCACGTGCTGCTGGCCTCTGCGTTGAGCTTGAAAATGAGGACAGGCTCTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCGTCTAATGAACATTCTGTTGCTGATGATCGTATAGTTCGAGTTGCTGGTCTATGTTCAGACTATGAACCACCACCCAATCCATCTGGTTGTGCTCGAAGTGAACCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCATCATTGAAACGATTGTTTGTGGAGAATCAGCCTTACATAGTTGGTGGATACTGCCAGCATGGATCATTAAACGACCCAGAGCCTTCTGGGAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTAAGAACATCTCTGATTGACACATCAAACAATATACTTTCTATCTCTGAAAAATATAAGTACATGAGGGAAACCTTTCGGAAGCGGCTTGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCACATAAAGGTGGAGACATGGTGATTGAATACACGGGTGAACTTGTTAGACCGCCAATTGCTGATCGGAGAGAGCACTTTATATACAATTCATTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGAGCGGGAAGCATTGCTCATTTAATAAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTAATAAGTGTTAATGGCGATGAGCATATTATAATATTTGCGAAGAGGGACATTAAACAGTGGGAAGAGCTCACTTATGATTATAGATTTTTCTCAATTGACGAACGGCTTTCTTGTTACTGTGGCTTCCCAAAGTGCCGAGGTATAGTAAATGATACAGAAGCAGAAGAGCGAGCTGCTACCCTATATGCACCACGAAGGGAATTAATAGATTGGAGAGGAGAATGA 3279 0.4389 MAAAFQEGGGGDEDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLTALAAHHHFNNLDHKKATSSSSSSSQPPSSKPPLLFVYSRRRKRHSPSTAPFYDSLCKTEGEVNADENENEKRLLKKRKIGSTELERLGVDLNTAIGDVDGPRLRECRNQFGNSGAAGNFKCGSLENLPKGSPDSRPVKKWIGLSFDNADPEVFIGLRCKVYWPMDLKAYTGYVRSYDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEVKHLKLNFAKVRDNNVSDYDVEEMLAMAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLARNCKGLKMILGGRSVPVQFFGTHDFARVRVQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMIELQKRCTADNCNNVSGEDGGCTDSGDECLNGERTLMALENVETFPYEVGDLQILSLGKIVKDSAFRDGRFIWPEGYTAVRKFTSVTDPEVFAPYKMEVLRDPESKVRPLFRVTVDGGEQFNGNTPSACWSEVFKKIKKMEKNASEGTLAEGGVEKGYESGSDMFGFSNPKVLKLIKGLSKSKISSKNSFCKLGSQRHNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADDRIVRVAGLCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYIVGGYCQHGSLNDPEPSGRGVCSKFFCSQQRLRTSLIDTSNNILSISEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPHKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLSCYCGFPKCRGIVNDTEAEERAATLYAPRRELIDWRGE 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03062 1092 ProSiteProfiles Extended PHD (ePHD) domain profile. 678 802 IPR034732 -
Phco3g03062 1092 SMART fyrn_3 467 511 IPR003888 GO:0005634
Phco3g03062 1092 ProSiteProfiles Zinc finger PHD-type profile. 624 675 IPR019787 -
Phco3g03062 1092 Pfam PHD-zinc-finger like domain 680 801 - -
Phco3g03062 1092 CDD ePHD_ATX1_2_like 687 801 IPR041956 -
Phco3g03062 1092 Gene3D - 454 593 - -
Phco3g03062 1092 Gene3D SET domain 881 1082 IPR046341 -
Phco3g03062 1092 Gene3D - 299 411 - -
Phco3g03062 1092 Pfam PHD-finger 639 673 - -
Phco3g03062 1092 Pfam PWWP domain 313 400 IPR000313 -
Phco3g03062 1092 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 804 IPR013083 -
Phco3g03062 1092 Gene3D - 215 268 - -
Phco3g03062 1092 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 672 IPR013083 -
Phco3g03062 1092 FunFam Histone-lysine N-methyltransferase 676 804 - -
Phco3g03062 1092 ProSiteProfiles PWWP domain profile. 312 375 IPR000313 -
Phco3g03062 1092 SUPERFAMILY FYVE/PHD zinc finger 618 688 IPR011011 -
Phco3g03062 1092 ProSiteProfiles FYR domain FYRN motif profile. 453 511 IPR003888 GO:0005634
Phco3g03062 1092 FunFam Histone-lysine N-methyltransferase 861 1085 - -
Phco3g03062 1092 SMART PWWP_4 310 373 IPR000313 -
Phco3g03062 1092 SMART fyrc_3 519 613 IPR003889 GO:0005634
Phco3g03062 1092 Pfam F/Y-rich N-terminus 459 508 IPR003888 GO:0005634
Phco3g03062 1092 SMART set_7 928 1052 IPR001214 GO:0005515
Phco3g03062 1092 MobiDBLite consensus disorder prediction 71 96 - -
Phco3g03062 1092 CDD PHD_ATX1_2_like 626 672 IPR042010 -
Phco3g03062 1092 ProSiteProfiles FYR domain FYRC motif profile. 515 601 IPR003889 GO:0005634
Phco3g03062 1092 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 606 669 IPR002219 -
Phco3g03062 1092 ProSiteProfiles SET domain profile. 928 1046 IPR001214 GO:0005515
Phco3g03062 1092 CDD Tudor_Agenet_AtEML-like 217 267 - -
Phco3g03062 1092 SUPERFAMILY Tudor/PWWP/MBT 306 407 - -
Phco3g03062 1092 SUPERFAMILY SET domain 911 1065 IPR046341 -
Phco3g03062 1092 PANTHER PHD FINGER PROTEINS 55 1076 - -
Phco3g03062 1092 CDD SET_SETD1-like 916 1064 - -
Phco3g03062 1092 Pfam F/Y rich C-terminus 517 590 IPR003889 GO:0005634
Phco3g03062 1092 ProSiteProfiles Post-SET domain profile. 1052 1068 IPR003616 -
Phco3g03062 1092 Pfam SET domain 939 1045 IPR001214 GO:0005515
Phco3g03062 1092 ProSitePatterns Zinc finger PHD-type signature. 627 672 IPR019786 -
Phco3g03062 1092 CDD PWWP_AtATX1-like 311 406 - -
Phco3g03062 1092 MobiDBLite consensus disorder prediction 77 94 - -
Phco3g03062 1092 SMART PHD_3 626 673 IPR001965 -
Phco3g03062 1092 SMART PHD_3 736 802 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03062 Phco-Chr3 56761240 56777301 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco3g03062 zf-HC5HC2H_2 3.9e-33 CL0390