Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03032 ATGGCTTCAACCAACCCTTCTCCAAATGCTTCCCCTGTTGCAGTTCCTCCTGTACTTGGTGGTATTTTATCACCACCACCTTCTTCATCTTCTCCAACCAATTCCTCCACTCCTCCATCACCTCCCAATTCTTCCCAGCCCAATCAAACACCCGATTCCCCTGCTCCTTCATCTCCCTCTGACCCTTCAGCTCCACCTCCTTCACCTCCTCAGGCAGTGCCTGTAACCCCTCCTCCTTCCATATCACTCTCTCCCCCACCATCTTCTCCATCACCACCAACTCTGCCCCCTCCTTCCCCACCAGATTCTCCACCACCATTACCACCAGCATCTCCAACGCCACCAGTTGCAACATCTCCCCCCTCACCACCAGCCACCACCACCGCTCCTCCTCCAGCTGAGGTTACACCTTCCCCTCCAATTTTGTCTCCACCAGCCTCACCAACTGTTACCCCTCCTCCCCAATCTCCTCCCGCTACAATTCCCCCTCCTTCTCAACCAATTTCACAATCTCCTCCTCCTCCAGCCAATGTTCCAAGGCCACCATCCACCGGTTCTCCTCCACCGAAAGAAAGTCCTCCAAAAACTACTCCTTCACATGCACCCCCTCCATCAGTTTCTCAATCTCCTCCTAAGCCCCCTCCTTCTGATGTTCCCCCTCCATCCACATTGCCATCAACTCCTCCTTCAGCCCCTTCAGGATCTTCACCTCCAGCTTCTTTGCCTGACCCCCCAACCAATGAAACAGCCTCTGGGGGTCCACCGGTACCACTACCGTCTCTTCCAACCGAGAAACCCACTGCTAGACCAACTAATGATGGTTCTAACAATATAGCTACAACTAACATGCCTTCACATTCAGGAGGGTTAAGTGCTGGAGTATCCGTCTCCATTGGAATTGTAGTTGGTTTTATTGTCCTCAGTCTTCTTGTTATGGCCGTGTGGTTTGTACAGAAGAAAAAGAAGAAGGAAAAAGGATCAAGAGGTGGTTATGCTGCTCCTTCTCCGTTTACCTCATCCCACAATTCAGGTACCTTATTCTTGAGGCCACATTCTCCAGCCAACTTTGTAGCAGGTAGTGGCTCTGGTAGTGATTTTGTATATTCTCCATCAGAACCAGGTGGAGTAAGTAGCTCAAGATCATGGTTCACATATGAAGAACTTATCCAAGCTACAAATGGATTTTCGGCACAAAATTTGCTGGGAGAAGGTGGATTTGGTTGTGTCTATAAAGGTTTGCTCGTAGATGGAAGAGAAGTAGCTGTGAAACAACTCAAAATTGGTGGTGGGCAAGGGGAACGTGAATTCAGGGCAGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTGGTTTCCTTGGTTGGTTACTGTATATCTGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACAATACTCTTGATTTCCATCTCCATGGTGAAAATAGACCAGTTATGGATTGGCCTACCAGAATGAAGGTTGCTGCTGGTGCAGCTAGAGGAATAGCTTACCTGCATGAAGACTGCCATCCACGGATTATTCATCGAGATATTAAGTCGTCAAACATCCTTCTTGATCTCAACTATGAAGCTCGAGTTTCGGACTTTGGGCTTGCAAAATTGGCACTAGATTCAAATACACATGTGACAACACGAGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAACTAACGGAAAAGTCTGATGTATATTCCTATGGCGTTGTGCTGTTGGAGTTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTTTGTTGAGTGAAGCAGTTGATAAAGAGGACTTTGAAATCTTGGTGGATTCAAGACTGGGAAAGAACTATGATAGAAATGAAATGTTCCGGATGATTGAGGCTGCTGCCGCCTGTGTACGCCACTTGTCAGTGAAGAGGCCACGCATGAGTCAGGTGGTGAGAGCTTTAGATTCCTTGGACGAGTTTACGGATCTGAATAATGGAATGAAACCGGGGCAGAGTTCGGTGTTTGATTCTGCACAGCAATCTGCACAAATCAGAATGTTTAGGAGGATGGCTTTTGGGAGCCAAGATAGTTCAAGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGAGATCAGGACTCAACAACAATGTTTTCCCAAAACAAAACTGGACCTTGGAATGTTTGA 2232 0.4745 MASTNPSPNASPVAVPPVLGGILSPPPSSSSPTNSSTPPSPPNSSQPNQTPDSPAPSSPSDPSAPPPSPPQAVPVTPPPSISLSPPPSSPSPPTLPPPSPPDSPPPLPPASPTPPVATSPPSPPATTTAPPPAEVTPSPPILSPPASPTVTPPPQSPPATIPPPSQPISQSPPPPANVPRPPSTGSPPPKESPPKTTPSHAPPPSVSQSPPKPPPSDVPPPSTLPSTPPSAPSGSSPPASLPDPPTNETASGGPPVPLPSLPTEKPTARPTNDGSNNIATTNMPSHSGGLSAGVSVSIGIVVGFIVLSLLVMAVWFVQKKKKKEKGSRGGYAAPSPFTSSHNSGTLFLRPHSPANFVAGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLVDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLDFHLHGENRPVMDWPTRMKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSYGVVLLELITGRKPVDASQPIGDESLVEWARPLLSEAVDKEDFEILVDSRLGKNYDRNEMFRMIEAAAACVRHLSVKRPRMSQVVRALDSLDEFTDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSRDQDSTTMFSQNKTGPWNV 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03032 743 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 304 716 IPR047117 -
Phco3g03032 743 ProSiteProfiles Protein kinase domain profile. 395 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03032 743 SMART serkin_6 395 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03032 743 Gene3D Phosphorylase Kinase; domain 1 372 470 - -
Phco3g03032 743 Gene3D Transferase(Phosphotransferase) domain 1 471 687 - -
Phco3g03032 743 FunFam Proline-rich receptor-like protein kinase PERK8 368 470 - -
Phco3g03032 743 MobiDBLite consensus disorder prediction 1 285 - -
Phco3g03032 743 FunFam proline-rich receptor-like protein kinase PERK8 471 683 - -
Phco3g03032 743 MobiDBLite consensus disorder prediction 31 264 - -
Phco3g03032 743 MobiDBLite consensus disorder prediction 717 743 - -
Phco3g03032 743 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Phco3g03032 743 Pfam Protein tyrosine and serine/threonine kinase 398 668 IPR001245 GO:0004672|GO:0006468
Phco3g03032 743 SUPERFAMILY Protein kinase-like (PK-like) 373 668 IPR011009 -
Phco3g03032 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Phco3g03032 743 MobiDBLite consensus disorder prediction 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03032 Phco-Chr3 56459471 56464663 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Phco3g03032 PK_Tyr_Ser-Thr 1.7e-45 CL0016