Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03012 ATGGGGACGCCAAGAGGAACAACTCTTCTCTTTTTCACATTGTTCTTCTTTTGGTGCTCCGCAGATGCCTTGCTTTCTCCTAAGGGAGTGAACTTTGAAGTGCAAGCCTTAATGGGCATAAAACAATCTCTGGAGGATCCACATGGTGTTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGTAGCTGGACTATGGTCACATGTTCTTCAGAAAACTTGGTCGTTGGACTGGGCACTCCAAGTCAAAGTCTATCTGGTACTCTATCTCCAAGCATAGGAAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAAGTGGTTCAATCCCTTCAGAGCTGGGAAAACTTCCTAAGCTTCAGACCCTTGATCTCTCAAACAACTTCTTCAGAGGGGAGATTCCTCCCTCTCTGGGACACCTGAGAAGCCTCCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAATGCCCAGAGTCTCTGGCTAACATGACCCAGCTTAATTTTCTTGATTTGTCATACAACAATCTTAGTGGCCCGGTGCCCAGAATTTTAGCCAAATCCTTCAGCATTGTTGGAAACCCCCTTGTTTGTGCCACGGGAAAAGAGCCAAACTGCCATGGGATGACATTGATGCCTATGTCCATGAACTTAAACAATACCGAACATGCTTTACAATCAGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTTTGGGATGTCTCTGCCTCATAGTTATTGGTTTTGGAGGTGTTATTTGGTGGAGACACAAACACATTCAACAAGCATTCTTTGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTTCTACTAACAACTTCAGCAGCAAAAACATACTAGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCCCTGATGGTACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGAGATTCAATTTCAGACCGAAGTTGAAATGATCAGCCTGGCAGTGCACCGAAACCTCCTCAGACTCTATGGATTTTGCATGACAACAACAGAAAGGCTTTTGGTTTATCCATACATGTCCAATGGCAGTGTTTCTTCCCGTCTCAAGGGTAAACCAGTGCTGGACTGGGGCACTAGGAAGCACATTGCTTTGGGAGCAGCAAGAGGACTACTGTACCTTCATGAGCAATGTGATCCAAAGATAATCCACAGGGATGTGAAAGCTGCCAACATCTTGCTTGATGACTACTGTGAAGCTGTAGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGACTCACATGTCACAACTGCAGTGAGGGGCACAGTGGGGCATATTGCCCCAGAGTACCTGTCCACAGGACAATCCTCTGAGAAGACTGATGTTTTTGGATTTGGCATTCTCCTCCTTGAGTTGATCACAGGCCAGAGGGCTCTAGAGTTTGGAAAATCAGCCAATAACAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAAAAGCTTGAAATGCTAGTAGACAAGGATCTCAAGAGCAACTATGACAGAATTGAACTTGAGGAAATGGTTCAAGTGGCCCTCTTGTGTACTCAGTATCTTCCAGGGCATAGGCCTAAAATGTCTGAAGTGGTACGCATGCTTGAAGGTGATGGACTAGCAGAAAGATGGGAAGCTTCACAAAGAGTTGACACAACCAAGTACAAACCCCAAGAGTCCTCTTCATCAGATAGGTATTCTGATCTCACTGATGACTCCTTGTTGTTAGTCCAAGCCATGGAGCTCTCAGGACCCAGGTGA 1872 0.446 MGTPRGTTLLFFTLFFFWCSADALLSPKGVNFEVQALMGIKQSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVVGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNISGSIPSELGKLPKLQTLDLSNNFFRGEIPPSLGHLRSLQYLRLNNNSLVGECPESLANMTQLNFLDLSYNNLSGPVPRILAKSFSIVGNPLVCATGKEPNCHGMTLMPMSMNLNNTEHALQSGRPKTHKMAIAFGLSLGCLCLIVIGFGGVIWWRHKHIQQAFFDVKDRHHEEVYLGNLKRFQFRELQISTNNFSSKNILGKGGFGNVYKGVLPDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVSSRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVKKIHQEKKLEMLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRVDTTKYKPQESSSSDRYSDLTDDSLLLVQAMELSGPR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03012 623 SUPERFAMILY Protein kinase-like (PK-like) 280 573 IPR011009 -
Phco3g03012 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Phco3g03012 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 583 - -
Phco3g03012 623 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
Phco3g03012 623 SMART serkin_6 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03012 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Phco3g03012 623 MobiDBLite consensus disorder prediction 584 606 - -
Phco3g03012 623 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Phco3g03012 623 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Phco3g03012 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Phco3g03012 623 SMART LRR_typ_2 120 143 IPR003591 -
Phco3g03012 623 SMART LRR_typ_2 168 191 IPR003591 -
Phco3g03012 623 SMART LRR_typ_2 144 167 IPR003591 -
Phco3g03012 623 SMART LRR_typ_2 96 119 IPR003591 -
Phco3g03012 623 Pfam Protein kinase domain 304 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03012 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Phco3g03012 623 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Phco3g03012 623 SUPERFAMILY L domain-like 33 305 - -
Phco3g03012 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Phco3g03012 623 MobiDBLite consensus disorder prediction 590 606 - -
Phco3g03012 623 ProSiteProfiles Protein kinase domain profile. 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g03012 623 Pfam Leucine Rich repeats (2 copies) 97 137 IPR025875 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03012 Phco-Chr3 56348201 56351245 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco3g03012 Pkinase 6.1e-44 CL0016