Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03011 ATGTTGGAGGGAGAACCTGCTGGCACGTGGGCGCGCACGTGCGACACGTGCCGCTCCGCACCATCCACCGTCTTCTGCCGCGCCCACAACGCCTTCCTCTGCTCCTCCTGCGATGGGCGCGTTCACCACGCCTCCTCCTCCTCTTGGCACGAGCGCGTCTGGGTCTGTGAGGCCTGCGAGCGTGCACCGGCGGCGTTCCTCTGCAAGGCTGACGCCGCCTCCCTCTGTTCCTCATGCGACGCCGACATCCACTCCGCCAACCCTCTCGCAAGCCGCCACCACCGCGTCCCCATCCTCCCCATAGCTGCCGGCCACCACTCCCACGTCGAAATAGACGTCGCCGACGACGACGATGCTGCTGACGTGGATGACGACGACGAAACCGCTTCCTGGCTCTTGCTCAACCCTGTCAAAACTGGCACTGTCCCTAACAGCAACAATAATGGGTTCTTGTACAGTGGTGAGGTTGATGAGTATTTGGACCTTGTTGATAACTGTAACTCTTGCGGTGACAACAACCACTTCGCTGCAACTACCACTACTGCCACTACTGCTGATCATTACACTCAGCACCATCATTTTGATGGTGTTTCTCAGAAGAGTTATGCTGGGGACAGTGTGGTTCCGGTTCAGCAGCACCAGCATTTTCAGCTTGGCTTGGAGTTTGAGAATTCTAAGCCTGCCTTCAGTTACAATGGTTCTATTAGTCAAAGTATTTCAGTTTCAACATTGGATATTGGTGTTGTACCTGAATCACCGATGAGGGATGTCTCAATTTCCCATACAAGACCCCCCAAAGGGACGATTGACCTATTTTCTGGACCTCCCATTCAGATGATGCCTTCCCACTTTTCTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTACAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCTCGTATAAAGGGTCGATTCGCCAAGAGAACAGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1077 0.5283 MLEGEPAGTWARTCDTCRSAPSTVFCRAHNAFLCSSCDGRVHHASSSSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPIAAGHHSHVEIDVADDDDAADVDDDDETASWLLLNPVKTGTVPNSNNNGFLYSGEVDEYLDLVDNCNSCGDNNHFAATTTTATTADHYTQHHHFDGVSQKSYAGDSVVPVQQHQHFQLGLEFENSKPAFSYNGSISQSISVSTLDIGVVPESPMRDVSISHTRPPKGTIDLFSGPPIQMMPSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03011 358 ProSiteProfiles CCT domain profile. 289 331 IPR010402 GO:0005515
Phco3g03011 358 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
Phco3g03011 358 SMART bboxneu5 51 98 IPR000315 GO:0008270
Phco3g03011 358 SMART bboxneu5 9 48 IPR000315 GO:0008270
Phco3g03011 358 CDD Bbox1_BBX-like 14 55 - -
Phco3g03011 358 CDD Bbox1_BBX-like 55 98 - -
Phco3g03011 358 ProSiteProfiles Zinc finger B-box type profile. 9 55 IPR000315 GO:0008270
Phco3g03011 358 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 345 IPR045281 GO:0009909
Phco3g03011 358 Pfam CCT motif 289 331 IPR010402 GO:0005515
Phco3g03011 358 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03011 Phco-Chr3 56332021 56334325 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco3g03011 zf-B_box 4e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01509 5 50846572 50848701 Phco3g03011 3 56332021 56334325 PCT