Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g03001 ATGGAACTATTGGCTCTTCGTGATTGGAAATGGATCAACTTGTCAACACCATTCACCCTTATGAATTCTTTTCAGGTTGGAATCATGTATATCCCAAAGGCCAGTGAGATCACAGGACTGAATTATTTACTCCCTTCAGACCCTTGTCCTTACCCGGGTCACTACAGCATGACTCAGAACACCATCCCCACATTTCAACTTCACAAACTCTCAAACCAATTCTATGGTTTCCAAAACTCTCATCAAGGGGTTGCAGAATTCAGCCCCCCTCAGTCCTCATGCATCAGCAGCACCTCCACCTCTGACGAAGCAGATGAGCAGCAGCAAAGTCTCATCAATGAGAGGAAGCACAGGAGGATGATATCGAACCGTGAGTCAGCACGCAGGTCACGCATGAGGAAGCAGAAACACCTTGATGAACTGTGGTCACAGGTGGTTTGGCTGAGGAATGAAAACCACCAGCTTATGGACAAGCTGAACCATGTGTCTGAGTCACAAGATAGAGTTGCTCAAGAGAATGTTCAGCTGAGAGAAGAAGCCTCAGAACTTCGCGAAATGATATGTGACATGCAGCTACATAGTCCATACCACCCTCCTCCTCTGAGCCCCATTGAAGATGATGTCTCTCCCTATGTCAAATCTGATTCCTCAATCACTAGCTCCTTGAACCTGCTTGGTTGA 681 0.467 MELLALRDWKWINLSTPFTLMNSFQVGIMYIPKASEITGLNYLLPSDPCPYPGHYSMTQNTIPTFQLHKLSNQFYGFQNSHQGVAEFSPPQSSCISSTSTSDEADEQQQSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESQDRVAQENVQLREEASELREMICDMQLHSPYHPPPLSPIEDDVSPYVKSDSSITSSLNLLG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g03001 226 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 118 133 IPR004827 GO:0003700|GO:0006355
Phco3g03001 226 Gene3D - 113 167 - -
Phco3g03001 226 Coils Coil 166 186 - -
Phco3g03001 226 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 113 176 IPR004827 GO:0003700|GO:0006355
Phco3g03001 226 MobiDBLite consensus disorder prediction 86 107 - -
Phco3g03001 226 MobiDBLite consensus disorder prediction 86 132 - -
Phco3g03001 226 MobiDBLite consensus disorder prediction 108 132 - -
Phco3g03001 226 Pfam bZIP transcription factor 115 164 IPR004827 GO:0003700|GO:0006355
Phco3g03001 226 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 40 197 IPR044521 -
Phco3g03001 226 FunFam BZIP transcription factor 113 164 - -
Phco3g03001 226 SMART brlzneu 111 175 IPR004827 GO:0003700|GO:0006355
Phco3g03001 226 CDD bZIP_plant_GBF1 116 164 IPR045314 GO:0003700|GO:0006355
Phco3g03001 226 SUPERFAMILY Leucine zipper domain 115 164 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g03001 Phco-Chr3 56285828 56288278 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco3g03001 bZIP_1 1.1e-12 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g03001 3 56285828 56288278 Phco3g03001 3 56285828 56288278 ECH
Phco5g01517 5 50920327 50920923 Phco3g03001 3 56285828 56288278 PCT