Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02988 ATGGTTGATCAAGGTGATTTAGTTGTCATCTGTGTCTCTATTGGCGTGGCCCTTGGGGTTTTGATAGCTTGCTTAGTATATTTTGGAATAAGGTGGTACAATAAGCGAACTCATCTTAGCCGATCTGCGAATGAGCCTAGTTTAACAGCTATCCCTATACGAACAAATGGATTAGGAACAAGCACTGACTTCAGTGCTTCCCTCACCAGTTCCGTAGCCACTTATAGATCACCAAATCCTTCAAAAAACTCGCATCCAGCTGGGTGGAATCATCAGAATAAAGATGCGTTTGCTTCTGTATCAGGCATTCTGAAGTACTCATACAAGGAAATTCAAAAGGCCACACAAAATTTCACAAATACTTTGGGAGAAGGGTCATTTGGCACAGTTTATAAAGCCATGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTTCTAACGGAGGTGCTTCTGCTAGGAAGGCTGCATCATCGGAATCTTGTGAATTTGTTAGGGTACTGCGTAGATAAAGGACAGCTTATGCTTGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGATGAAAAAGAATTGAGTTGGGATGAAAGGCTGCAAATTGCTGTTGATATTTCACACGGAGTAGAATACCTTCATGAAGGGGCAGTACCACCCATTGTACATCGTGATTTGAAATCTGCTAATATTCTGCTAGATCACTCAATGAGAGCTAAGGTTTCTGATTTTGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGATCCAGCATACATTTCCTCGAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATATATCAACCTTGCTGCAATGGATTACGATGGTGTAGATGGGATTCTTGACAAGCAACTTGTGGGAAAATGCAATGTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACATAAATGTTTGCACAAATCACCTAGGAAACGCCCCTCTATAGGTGAGGTTTCGCAGGCTATATTGGGGATTAGGCAAAGGCGCCTCATGAAAGAAGACACCATGTCATTTGCAAGCACCAACTTCTCCCGAAGTGTGAGTCAAATAGAGGAACAACAGATTGAATTAAGTAGAATAATCACCATGAACCACAGGGAAATGGGGTGA 1269 0.4153 MVDQGDLVVICVSIGVALGVLIACLVYFGIRWYNKRTHLSRSANEPSLTAIPIRTNGLGTSTDFSASLTSSVATYRSPNPSKNSHPAGWNHQNKDAFASVSGILKYSYKEIQKATQNFTNTLGEGSFGTVYKAMMPTGEVVAVKMLAPNSKQGEKEFLTEVLLLGRLHHRNLVNLLGYCVDKGQLMLVYEFMSNGSLENLLYGDEKELSWDERLQIAVDISHGVEYLHEGAVPPIVHRDLKSANILLDHSMRAKVSDFGLSKEEIFDGRNSGLKGTYGYMDPAYISSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGKCNVEEVRQLAKIAHKCLHKSPRKRPSIGEVSQAILGIRQRRLMKEDTMSFASTNFSRSVSQIEEQQIELSRIITMNHREMG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02988 422 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02988 422 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Phco3g02988 422 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Phco3g02988 422 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 399 - -
Phco3g02988 422 FunFam serine/threonine-protein kinase PBS1-like 87 191 - -
Phco3g02988 422 SUPERFAMILY Protein kinase-like (PK-like) 92 373 IPR011009 -
Phco3g02988 422 Gene3D Phosphorylase Kinase; domain 1 82 191 - -
Phco3g02988 422 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 384 - -
Phco3g02988 422 CDD STKc_IRAK 122 373 - -
Phco3g02988 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Phco3g02988 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02988 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02988 Phco-Chr3 56185259 56188838 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Phco3g02988 PK_Tyr_Ser-Thr 1.8e-52 CL0016