Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02985 ATGGCTAGGTCTGCAAAAGGGCATCAAGATGAATTGGAGGACGATGAAGAAGAAGAAGAATTTCTAACTGCAAACACCTCTACCTCTCTCAACAAAGTGAAGGTGGACGAACCCAGCACGGGAAAGAGGGTGAATACGCATCGTTCGAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAGAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTTATCGAGTATATTCAGTTCCTACAGGAAAAATTACAAATTTATGAGCAGTCTTATGAAGGATGGAGTCAGGAGCCAGCGAAATTAATTCCATGGAGAAATCATCACGGGCCCGCAGAAAATCCTACCGATCCTTCTCAAACTATACAAAATGGGTCTGTTGATGAGAAAAATAACAGTGCCTCTCCATTGTTTCCCGGAAATATACCGAATCCTATGGAGTCTGATTTCTCAATGATGACTGTTCAGAAGGGCCACATCCCTGGCTCATCTACCGATGCGGTTCCCTTGACCATGCAAATGCGATTGGACATGTTTGATCCAGTTGTTAGCAGTGGTATGACAACCCAACATCTTCAGGAATCTGTTTCTAACGTTGACATGCATTCCCATACCCAGCCACAATTGTGGCTTGATAAATCAAACAAGGCCAACTATATTCTTCCACATGATAGTACAATGAAGGAACAGGAGGAGCTGGTGATTGAATCTGGATCAGATAGCATTTCTAGTGCCTATTCTCAGGGAATTTTAGATACTCTCACGCAAGTGCTGCAGTCTTCGGGGGTAGATATGTCCCAGACTAATCTCTCGGTGCAAATTGATGTTGGTAGACGAGCAAATGCTGAGTTGGTCCCCTCTGCATATAGTTCAAAGGTTCATGAAAATCAATTTGTGAGCAACCCAGCAATATCACGTTCCGGAGTTGATTACTGCAATATTGAATCCGAACAAAGTTCGAAGAGGCTCAGACAAGAAGCAAGCTAG 1032 0.4331 MARSAKGHQDELEDDEEEEEFLTANTSTSLNKVKVDEPSTGKRVNTHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWSQEPAKLIPWRNHHGPAENPTDPSQTIQNGSVDEKNNSASPLFPGNIPNPMESDFSMMTVQKGHIPGSSTDAVPLTMQMRLDMFDPVVSSGMTTQHLQESVSNVDMHSHTQPQLWLDKSNKANYILPHDSTMKEQEELVIESGSDSISSAYSQGILDTLTQVLQSSGVDMSQTNLSVQIDVGRRANAELVPSAYSSKVHENQFVSNPAISRSGVDYCNIESEQSSKRLRQEAS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02985 343 SMART finulus 52 102 IPR011598 GO:0046983
Phco3g02985 343 Coils Coil 93 113 - -
Phco3g02985 343 FunFam BHLH domain class transcription factor 44 116 - -
Phco3g02985 343 Coils Coil 5 25 - -
Phco3g02985 343 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Phco3g02985 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Phco3g02985 343 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 340 IPR044295 GO:0003700|GO:0006351|GO:0046983
Phco3g02985 343 Gene3D - 44 117 IPR036638 GO:0046983
Phco3g02985 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 125 IPR036638 GO:0046983
Phco3g02985 343 CDD bHLH_AtBIM_like 45 121 - -
Phco3g02985 343 MobiDBLite consensus disorder prediction 36 62 - -
Phco3g02985 343 MobiDBLite consensus disorder prediction 128 150 - -
Phco3g02985 343 MobiDBLite consensus disorder prediction 119 150 - -
Phco3g02985 343 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02985 Phco-Chr3 56158801 56162152 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g02985 HLH 1.6e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02985 3 56158801 56162152 Phco3g02985 3 56158801 56162152 ECH