Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02965 ATGGTGGCTATGATGAGTTTCCTATCAACAGACAAAGGGTGGACGAAAGGTCCTTGGACTGGTGAAGAGGACAAGTTGCTAAGTGAATATGTTTGCTTTTATGGGGAAGGAAGGTGGAGTTCAGTGGCAAAGTTTACAGGATTAAATAGGAGCGGCAAAAGCTGTAGGTTAAGATGGGTAAATTATTTGAAGCCTGGTCTCAAGAAAGGTCAATTAACACCTTTGGAAGAAGGAACCATAATGGAACTACATGCAATTTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCATTTCGGGAAGAGGGAGAAATTCAAACACAAGAAGCTACAAAAGCGACAGAAGGAACAACAACCTAAAATGTGTGATTTCAGAAGCATGATGTGCCACAAGGATACCATAAACGAAACAAAATCGTTTGAGACACAAAATAATAAGCTACAAGAAATTGGTTTGATGTACCCAACAATAGATAACGAATATAATACCGTTGCTTCCATGCATGAGGGTTTCTCATCCACGTGGCCAGACACTCTAGTGGATGATGACTTATGGTTTGGCTTATGGGACTTTGATGAACCACTGAGTTTTGGAGATAATGTTAACCAGTTTAGCAAATGTGCCATGCCAAATGAAGTCACATTTTCTGTTGGAGGGGATTCCACGCAAAGTGATGATAAAACTTATTGTTTTGATGATACATATGGCAACCTCTTCTACGGAAAAGACATATTTGGATGA 786 0.3995 MVAMMSFLSTDKGWTKGPWTGEEDKLLSEYVCFYGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPLEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKFKHKKLQKRQKEQQPKMCDFRSMMCHKDTINETKSFETQNNKLQEIGLMYPTIDNEYNTVASMHEGFSSTWPDTLVDDDLWFGLWDFDEPLSFGDNVNQFSKCAMPNEVTFSVGGDSTQSDDKTYCFDDTYGNLFYGKDIFG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02965 261 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Phco3g02965 261 Gene3D - 15 68 - -
Phco3g02965 261 CDD SANT 73 114 IPR001005 -
Phco3g02965 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Phco3g02965 261 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Phco3g02965 261 FunFam Myb transcription factor 16 68 - -
Phco3g02965 261 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Phco3g02965 261 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Phco3g02965 261 SMART sant 68 116 IPR001005 -
Phco3g02965 261 SMART sant 15 65 IPR001005 -
Phco3g02965 261 Gene3D - 71 141 - -
Phco3g02965 261 CDD SANT 18 63 IPR001005 -
Phco3g02965 261 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 15 161 - -
Phco3g02965 261 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Phco3g02965 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02965 Phco-Chr3 56014591 56015868 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02965 Myb_DNA-binding 8.5e-15 CL0123