Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02947 ATGTACAGGTTAAGAGTTGCGGACCAATATATTCCCCCGGCAAAGGACACGGGTATGCTTAGGAGATGGGATGTTGATAAAATTTATTTAACCAGTCCAGGTGTAGAATCTTTTCATTTTAACAATACAATTAAGCTGAACTTCACTAAGACTCCTAACTACACTGCACCAGACGAAGTGTACCGATCCTTGAGGAATATGGGACGTAGTGGGTCTATCAACAAGGGGTTCAACCTCACATGGCAGCTTCCGGTTGATTTGGGTTTCACCTACTTGCTAATGTTACACTTTTGCCAGCTTAACCCGGAGATTATCAAGCCTGGTGATCTCACCTTCTACATCTACATTCAGGATCAGTGGGTTGAAGAGTGGGCAGACGTCCTCGTTTGGAGCGATAAACAAAGGGGTGTACCAGTGGTTAGAAATTACACAGTTTTTATGCCACCCAATCAGGACAAGGTAAATCTTTCACTTAAAATGCATCCTAACCCTCAAAGCTTGTGCTTGGACGCACAAATAAACGCAATTGAGCTCTTCAAAATCAACGACTCATCCAGTAATCTCGCTGGACCAAATCCATCCCCTTATCCTAAAATCTCTGAGGTTTCTAATCAAATCCCAAATAAGAAGAGCAGCGGCACCAGGAGACCCCTAATTCCCGCTGTCGCTGGTGCAGTTTCTGGTTTCGTTTTACTCTCCTTTATAGTTGCTTTGTTCGTCATCAAACGCAAGCATAGTGTTGCCATCGACAAGGGTTCCAACCAAAAAGACAGAACTTCTCGCAGGGGTGGCTCATCATCGCTACCAACCAACCTCTGCCGTCACTTCTCAATCGCAGATATCAGGGCCGCCACAAACAACTTCGACGAACTCTTCGTCGTTGGAGTGGGAGGTTTCGGCAACGTGTACAAAGGCTACATCGACGACGGTTCAACGCCTGTCGCAATCAAAAGACTCAAACCGGGTTCTCAGCAAGGTCTGAACGAGTTCACGAACGAGATCGAAATGCTCTCTCAACTTCGTCATCTCCATCTTGTTTCCCTTATCGGTTATTGCTACGATAGCAACGAGATGATACTCGTTTACGACCTCATGGATCGTGGATCCCTCCGTGACCATCTCTACTACACCGATAACCCGTCCCTGCCGTGGAAGCAAAGGGTCGAAATATGCATAGGTGTTGCACGAGGATTGCATTATCTACATACAGGTGTGAAGCAGGCGATCATTCACCGTGACGTGAAGAGCAGCAATATCTTGTTGGATGAAAAATGGGTTGCCAAGGTTTCAGACTTCGGTTTATCCAGAATTGGGCCCACAGGCATTTCGATGAGTCATGTGAACACTCAGGTGAAAGGCAGCATAGGATACTTAGACCCGGAGTACTACAAACGACAGCGTTTGACGGAGAAGTCAGACGTGTACTCGTTTGGCGTTGTGCTCTTGGAAGTATTGTGTGGGAGACAACCTCTGGTCCACTGGGAGGAGAAGCAACGGATATCAGTTGTTAAATGGGCGAAGCACTGCTATGAGGAGGGATGTCTGTGTGAGATTGTGGATCCTTCATTGAAGGGCAACATAGCAGCTCACTGTTTGCACAAATTTGGTGAGATTGCACTGAGCTGCTTGCAGGAGGATGGGGCCGAGAGGCCCTCCATGAAAGACGTGATTGGGATGCTGGAGTTGGTTCTGCAGCTTCAGAATAGTGGTGTTGGTGAGGAGGTATCGAGCAGTGGTGAGTTTAGCCAACATGGGGGAGATTATAGTAAGAGCACCTCAACAAGCGATGGAGATAATAGCAGCTGGAGGAGCAAGGAATCTTCAGTGTTGATCCCTGGTGATGTTTTCTCAGAGATTAAGGATCCAAAGGGACGATGA 1878 0.4707 MYRLRVADQYIPPAKDTGMLRRWDVDKIYLTSPGVESFHFNNTIKLNFTKTPNYTAPDEVYRSLRNMGRSGSINKGFNLTWQLPVDLGFTYLLMLHFCQLNPEIIKPGDLTFYIYIQDQWVEEWADVLVWSDKQRGVPVVRNYTVFMPPNQDKVNLSLKMHPNPQSLCLDAQINAIELFKINDSSSNLAGPNPSPYPKISEVSNQIPNKKSSGTRRPLIPAVAGAVSGFVLLSFIVALFVIKRKHSVAIDKGSNQKDRTSRRGGSSSLPTNLCRHFSIADIRAATNNFDELFVVGVGGFGNVYKGYIDDGSTPVAIKRLKPGSQQGLNEFTNEIEMLSQLRHLHLVSLIGYCYDSNEMILVYDLMDRGSLRDHLYYTDNPSLPWKQRVEICIGVARGLHYLHTGVKQAIIHRDVKSSNILLDEKWVAKVSDFGLSRIGPTGISMSHVNTQVKGSIGYLDPEYYKRQRLTEKSDVYSFGVVLLEVLCGRQPLVHWEEKQRISVVKWAKHCYEEGCLCEIVDPSLKGNIAAHCLHKFGEIALSCLQEDGAERPSMKDVIGMLELVLQLQNSGVGEEVSSSGEFSQHGGDYSKSTSTSDGDNSSWRSKESSVLIPGDVFSEIKDPKGR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02947 625 MobiDBLite consensus disorder prediction 190 214 - -
Phco3g02947 625 FunFam FERONIA receptor-like kinase 1 182 - -
Phco3g02947 625 FunFam receptor-like protein kinase FERONIA 250 364 - -
Phco3g02947 625 MobiDBLite consensus disorder prediction 574 608 - -
Phco3g02947 625 Pfam Malectin-like domain 2 181 IPR024788 -
Phco3g02947 625 Gene3D Phosphorylase Kinase; domain 1 248 364 - -
Phco3g02947 625 MobiDBLite consensus disorder prediction 190 212 - -
Phco3g02947 625 CDD STKc_IRAK 303 561 - -
Phco3g02947 625 Gene3D Transferase(Phosphotransferase) domain 1 365 579 - -
Phco3g02947 625 Gene3D - 1 182 - -
Phco3g02947 625 MobiDBLite consensus disorder prediction 574 607 - -
Phco3g02947 625 SMART serkin_6 288 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02947 625 ProSitePatterns Protein kinases ATP-binding region signature. 294 317 IPR017441 GO:0005524
Phco3g02947 625 PANTHER OS07G0166700 PROTEIN 272 567 IPR045272 GO:0004714|GO:0006468
Phco3g02947 625 ProSiteProfiles Protein kinase domain profile. 288 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02947 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Phco3g02947 625 SUPERFAMILY Protein kinase-like (PK-like) 264 562 IPR011009 -
Phco3g02947 625 Pfam Protein tyrosine and serine/threonine kinase 294 558 IPR001245 GO:0004672|GO:0006468
Phco3g02947 625 FunFam Receptor-like protein kinase FERONIA 365 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02947 Phco-Chr3 55851300 55853177 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Phco3g02947 PK_Tyr_Ser-Thr 2.5e-51 CL0016