Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02924 ATGCTACTTTCGGACACTCCCTTTTTTTTCGTGGGCAAACTCTTCCTGTTGTTTGCTTCCTTCTGCACTTCCCATCACATTCTCACTGTGCCATCATCTTCACAATCACACCCTTCTTCGCGACCACCACATTCCCAGATGGCCTTGCAAACAGCTACTCCTCCAACTACTCCCAGTGCCCAAGTCGTGGGTAATGCATTTGTTGAACAATATTACCACATTCTTCACCATTCACCAGATCTGGTCTATCGGTTTTACCACAACTCTAGTGTGATAAGCCGTCCTGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCACTAAATTTCAAGGAATTTAAAGCAGAGATAAAGACTGCAGATGCTCAAAAATCATACCAGGAAGGAGTAACTGTGCTGGTGACTGGATGCTTGACTGGCAAGGATAACATGAGAAGAAAATTTGCACAGTCGTTCTTTCTTGCTCCACAAGACAATGGTTATTTTGTTCTTAATGATGTTTTTAGGTATGTAGAAGATGATGAACCATCAGAACTGCCTCCAGTTAATGGAGATGGTGATGCAGCTGCTGTTAAAATAACCCCAGAACCAGAATCCAGTCTTGTTGCTGATTCTCCTGCCCCAGACTCCACAAATTCTCTTGCGAACAAGGGTCAAATTGTTGTGGAGAAGGCTTATGCTCCATCTAATCATCACGAGAGACAGATACCTGCTGAAAATGAAGACAATGTAGAATCCCATTTTCAGTCAAATGGAAATGATGATTCTCAGGCCACAGAAGTGGCTTCTTTAGCCCAGGAGGATGCTCCAAAGCAGTCTTATGCATCAATTGTGAAAGTCCAAAAAGGGAGTTCGGTACCAACTAAAGTTTATGTGCCTACTAATAGCCTAAAGTCAGGGCCTAACAAAACTGAGAGCCTGGTAGTTGAGTCAGTAGAATCTAATGAAGTTCCTGAAGCAGCTTTGGATAGTGTTAACGGCCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAAGGACACTCCATTTATATTCGAAATTTACCTTTAAACGTGACGGTTGGTCAGTTGGAAGTGGAGTTTAAGAAATTTGGATCCATCAAGCCGGAAGGCATCCAAGTCAGAAATAACAAGCAGCAGGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCTATGAATAGTGCAATTCAGGCTTCACCTATTCCTATTGGGGGGCGTCAAGCTGTAGTCGAGATAAAGAGAACCACTACTCGAGTTGGCAGTGGCATTAGCAATCCTGGAAGATCTAGGATCCCACCCGGTAGGGGTGGATTACGAAGTGACTCTTTCAGGGGCCGTGGGAACTACGGTGGTGGTCGCAGATATGGTTGGAATGATTATGGAAGCCGTGGTGGTGAGTTTTCTGGTAGAGGTCACAGTCATGGTGATGGTGAGTTTTCTGGTAGAGGTCGCAGTCATGGTGAAAGCTATCACCAGGGAAGAGGGAGAGGTGGCCGGTCAAGCGGACCAAAACAGAATGCCGTTTCGAACTGA 1566 0.4438 MLLSDTPFFFVGKLFLLFASFCTSHHILTVPSSSQSHPSSRPPHSQMALQTATPPTTPSAQVVGNAFVEQYYHILHHSPDLVYRFYHNSSVISRPDSNGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYQEGVTVLVTGCLTGKDNMRRKFAQSFFLAPQDNGYFVLNDVFRYVEDDEPSELPPVNGDGDAAAVKITPEPESSLVADSPAPDSTNSLANKGQIVVEKAYAPSNHHERQIPAENEDNVESHFQSNGNDDSQATEVASLAQEDAPKQSYASIVKVQKGSSVPTKVYVPTNSLKSGPNKTESLVVESVESNEVPEAALDSVNGPESSDAHEEVEGHSIYIRNLPLNVTVGQLEVEFKKFGSIKPEGIQVRNNKQQGYCFGFVEFLSLNSMNSAIQASPIPIGGRQAVVEIKRTTTRVGSGISNPGRSRIPPGRGGLRSDSFRGRGNYGGGRRYGWNDYGSRGGEFSGRGHSHGDGEFSGRGRSHGESYHQGRGRGGRSSGPKQNAVSN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02924 521 Pfam Nuclear transport factor 2 (NTF2) domain 63 179 IPR002075 -
Phco3g02924 521 MobiDBLite consensus disorder prediction 428 521 - -
Phco3g02924 521 MobiDBLite consensus disorder prediction 206 225 - -
Phco3g02924 521 CDD RRM_SF 351 422 - -
Phco3g02924 521 MobiDBLite consensus disorder prediction 252 272 - -
Phco3g02924 521 SMART rrm1_1 350 422 IPR000504 GO:0003723
Phco3g02924 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 351 409 IPR000504 GO:0003723
Phco3g02924 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 349 426 IPR000504 GO:0003723
Phco3g02924 521 Gene3D - 329 433 IPR012677 -
Phco3g02924 521 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 59 503 IPR039539 -
Phco3g02924 521 SUPERFAMILY RNA-binding domain, RBD 343 425 IPR035979 GO:0003676
Phco3g02924 521 MobiDBLite consensus disorder prediction 32 57 - -
Phco3g02924 521 FunFam Nuclear transport factor 2 family protein 54 183 - -
Phco3g02924 521 CDD NTF2 59 181 IPR018222 -
Phco3g02924 521 MobiDBLite consensus disorder prediction 480 504 - -
Phco3g02924 521 FunFam Ras GTPase-activating protein-binding protein 1 337 469 - -
Phco3g02924 521 Gene3D - 52 184 - -
Phco3g02924 521 ProSiteProfiles Nuclear transport factor 2 domain profile. 63 179 IPR018222 -
Phco3g02924 521 SUPERFAMILY NTF2-like 59 180 IPR032710 -
Phco3g02924 521 MobiDBLite consensus disorder prediction 252 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02924 Phco-Chr3 55641181 55650906 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02924 3 55641181 55650906 Phco3g02924 3 55641181 55650906 ECH