Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02862 ATGGGACGATCACCATGCTGTGACAAGGTGGGTCTAAAGAAAGGACCATGGACGCCAGAGGAAGATCAGAAGCTCTTGGCATATATTGAAGAACATGGGCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTGAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAGCAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCAACACATTTGCCAAAGAGAACAGATAATGAGATAAAAAACTACTGGAACACGCATCTGAAGAAAAGGTTAGACAAAATGGGAATTGATCCGGTGACTCACAAGCCCAAGAACGATGCCATTCTCTCCAATGAGGGTCATTCCAAGAGTGCATCGAACCTAAGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCAGAAGCAAGATTGGTCAGAGAATCAAAACTACGTACCTCACATTCATCATCACCCTCACTGCAGCATTCTCTAATTGGCACTTCTGCATCGTCATCATCTTCTTCAGCTCCAGTATTACCCTCCTCAACACGTTATCTTGATCATGCTTGGAACAATGGTAGTAGTACTAGCACGGTTGCAACTAGGATGAGTGACCTTGAGTCCCCAACTTCTACCTTATCTGAGAACAACGTGCCACCAATTATGACCAGTGTGATTGAGTTTGTTGGTTCTTCAGAGAGAGGGATGGTGAAGGAAGAAGGAGAGCGAGAGTGGAACAAAGGTTTTCAGGAAAGCACCACCCATTTGGGAGAATACAAAGATGGCATGGAGAATTCAATGCCTTTCACGTCTAGTCTGCATGAGTTGACAGTGACCATGGCAACCACGTGGGGGTCTAGCACTACCAGTGCACATGCACATGGACATGTTTCTGAGGACGGATTCACCAACCTTTTGCTGAATTCTAACTCCGATCACAGGAGTTTGTCGTCGGAGGGTGGTGGAGACTCTAATAATAACTGTCATGGTAACAGTAGTGATGGTGGTAACGGTACCGGTAACGAGTTATACGAAGATAACAAGATCTATTGGAACAACATTCTTAATTTGATGAACTGTTCCTCCCCTTCGGATTCACCCATGTTCTGA 1167 0.4584 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPKNDAILSNEGHSKSASNLSHMAQWESARLEAEARLVRESKLRTSHSSSPSLQHSLIGTSASSSSSSAPVLPSSTRYLDHAWNNGSSTSTVATRMSDLESPTSTLSENNVPPIMTSVIEFVGSSERGMVKEEGEREWNKGFQESTTHLGEYKDGMENSMPFTSSLHELTVTMATTWGSSTTSAHAHGHVSEDGFTNLLLNSNSDHRSLSSEGGGDSNNNCHGNSSDGGNGTGNELYEDNKIYWNNILNLMNCSSPSDSPMF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02862 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco3g02862 388 FunFam MYB-related transcription factor 13 66 - -
Phco3g02862 388 CDD SANT 69 112 IPR001005 -
Phco3g02862 388 MobiDBLite consensus disorder prediction 323 359 - -
Phco3g02862 388 FunFam Transcription factor MYB39 68 136 - -
Phco3g02862 388 CDD SANT 16 61 IPR001005 -
Phco3g02862 388 SMART sant 13 63 IPR001005 -
Phco3g02862 388 SMART sant 66 114 IPR001005 -
Phco3g02862 388 MobiDBLite consensus disorder prediction 170 199 - -
Phco3g02862 388 Gene3D - 13 66 - -
Phco3g02862 388 MobiDBLite consensus disorder prediction 121 148 - -
Phco3g02862 388 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco3g02862 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco3g02862 388 MobiDBLite consensus disorder prediction 168 199 - -
Phco3g02862 388 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco3g02862 388 Gene3D - 68 142 - -
Phco3g02862 388 MobiDBLite consensus disorder prediction 215 236 - -
Phco3g02862 388 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco3g02862 388 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco3g02862 388 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco3g02862 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02862 Phco-Chr3 55052144 55054805 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02862 Myb_DNA-binding 1.7e-15 CL0123