Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02858 ATGGAAGAATTATCAGGTGTGAGAAAAGGAGCATGGAGTAAATTTGAAGATGAACTTCTAAAAGCATGCGTTCAGCTTTACGGGGAAGGAAAATGGCACCTTGTTCCTCAGAGGGCAGGAGCCTTGCATAATTGTGAGCGCAGGTGGTCTCTGATTGCAGGAAGACTTCCAGGAAGAACTTCAAATGATGTTAAGAATTACTGGAACAGCTACACACGACGTAAATTACACACTCACAACAAAGATTACGTAGTAAAGCAATCAACACTGAAACCCCATCAAGTTATAAAGCCTGTACCTCTAGCTTTGTCAAAAACTTCCCCCAAGTTACTGCAAGGGACATTTATAAATAGTTCCAATGTTGGTGTCAGTGAACAAGGTGTAACTTCTTCGTCAAATTGGTGGCAAACTCTTTTAGATGAAAAGGGAGAGAATATTACAGTGAACAATACAGGCTTCTTTGGAGAGGAAGATGGAGTGTTTGAACTATGGAATCAAGAACTTACTTCAATTGATTCTCACTTTCTTACAGAAGCTGAAACTTGGAGCGATATGTTTCTTGACTTAGGAGTTAATTAG 579 0.3972 MEELSGVRKGAWSKFEDELLKACVQLYGEGKWHLVPQRAGALHNCERRWSLIAGRLPGRTSNDVKNYWNSYTRRKLHTHNKDYVVKQSTLKPHQVIKPVPLALSKTSPKLLQGTFINSSNVGVSEQGVTSSSNWWQTLLDEKGENITVNNTGFFGEEDGVFELWNQELTSIDSHFLTEAETWSDMFLDLGVN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02858 192 Gene3D - 7 77 - -
Phco3g02858 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 76 IPR017930 -
Phco3g02858 192 SUPERFAMILY Homeodomain-like 6 68 IPR009057 -
Phco3g02858 192 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 47 94 - -
Phco3g02858 192 Pfam Myb-like DNA-binding domain 9 40 IPR001005 -
Phco3g02858 192 Pfam Myb-like DNA-binding domain 41 71 IPR001005 -
Phco3g02858 192 ProSiteProfiles Myb-like domain profile. 4 72 IPR001005 -
Phco3g02858 192 CDD SANT 11 71 IPR001005 -
Phco3g02858 192 SMART sant 8 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02858 Phco-Chr3 54994081 54996139 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco3g02858 Myb_DNA-binding 4.9e-07 CL0123