Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02853 ATGGAAGAATTATCAGGTGTGAGAAAAGGAGCATGGAGTAAATTTGAAGATGAACTTCTAAAAGCATGCGTTCAGCTTTACGGGGAAGGAAAATGGCACCTTGTTCCTCAGAGGGCAGGGTTGAACAGATGCAGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTAAAACCAAATATCAAGCGAGGAGATTTTAGTGAAGATGAAATTGATTTGATGATCAGATTGCATAAACTTTTGGGAAACAGGTGGTCTCTGATTGCAGGAAGACTTCCAGGAAGAACTTCAAATGATGTTAAGAATTACTGGAACAGCTACACACGACGTAAATTACACACTCACAACAAAGATTACGTAGTAAAGCAATCAACACTGAAACCCCATCAAGTTATAAAGCCTGTACCTCTAGCTTTGTCAAAAACTTCCCCCAAGTTACTGCAAGGGACATTTATAAATAGTTCCAATGTTGGTGTCAGTGAACAAGGTGTAACTTCTTCGTCAAATTGGTGGCAAACTCTTTTAGATGAAAAGGGAGAGAATATTACAGTGAACAATACAGGCTTCTTTGGAGAGGAAGATGGAGTGTTTGAACTATGGAATCAAGAACTTACTTCAATTGATTCTCACTTTCTTACAGAAGCTGAAACTTGGAGCGATATGTTTCTTGACTTAGGAGTTAATTAG 684 0.383 MEELSGVRKGAWSKFEDELLKACVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEIDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNSYTRRKLHTHNKDYVVKQSTLKPHQVIKPVPLALSKTSPKLLQGTFINSSNVGVSEQGVTSSSNWWQTLLDEKGENITVNNTGFFGEEDGVFELWNQELTSIDSHFLTEAETWSDMFLDLGVN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02853 227 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Phco3g02853 227 FunFam Myb transcription factor 9 61 - -
Phco3g02853 227 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Phco3g02853 227 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Phco3g02853 227 CDD SANT 65 106 IPR001005 -
Phco3g02853 227 Gene3D - 9 61 - -
Phco3g02853 227 FunFam Transcription factor MYB113 64 135 - -
Phco3g02853 227 CDD SANT 11 56 IPR001005 -
Phco3g02853 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 60 IPR017930 -
Phco3g02853 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Phco3g02853 227 Gene3D - 64 130 - -
Phco3g02853 227 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Phco3g02853 227 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 128 - -
Phco3g02853 227 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Phco3g02853 227 SMART sant 61 109 IPR001005 -
Phco3g02853 227 SMART sant 8 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02853 Phco-Chr3 54917337 54919395 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02853 Myb_DNA-binding 5.6e-15 CL0123