Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02852 ATGGAAGGAGCATTACCAGGTGTGAGGAAAGGAGCATGGAGTCAAACTGAAGATGACCTTCTGAGAGAGTGCGTCCAACTCTACGGGGAAGGAAAATGGCACCTTGTTCCTGGAAGAGCAGGGTTGAACAGATGCCGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGGGATTTTGGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGATGGTCTCTGATTGCTGGAAGACTTCCGGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGCAAAGTACACTCTCACAAAAAAGATGACGACAACAACAACAACGTAAAAGATTCCGAAACAAGTTGGAAACCCCACCAAGTGATAAAGCCTGTGCCTCGAGCTTTGCGAAAAGCATCGCCCTTGGTGCAGGGAAAAGTGATGAGTAGTTCGGAAGTTGGTGTCAGCGAAGGATTTTCATCAGGGTGTGAGAATTGGTGGGAAACTCTGTTAGATGAGAAGGAAGAGAGCACTGCAGTTGACAACATGATGTGGTTCCCTGGTGCCAAAGATGGAGCATTTGAGCTTTGGGATGAAGAACTTGGTTCTATTGCTTCTGACTTTCTTGCAGAAGCTCAAACATGGAGTGATTTTCTTCTTAATTAA 693 0.4459 MEGALPGVRKGAWSQTEDDLLRECVQLYGEGKWHLVPGRAGLNRCRKSCRLRWLNYLKPNIKRGDFGEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRRKVHSHKKDDDNNNNVKDSETSWKPHQVIKPVPRALRKASPLVQGKVMSSSEVGVSEGFSSGCENWWETLLDEKEESTAVDNMMWFPGAKDGAFELWDEELGSIASDFLAEAQTWSDFLLN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02852 230 Gene3D - 10 62 - -
Phco3g02852 230 CDD SANT 68 108 IPR001005 -
Phco3g02852 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Phco3g02852 230 FunFam Myb transcription factor 10 62 - -
Phco3g02852 230 CDD SANT 12 57 IPR001005 -
Phco3g02852 230 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Phco3g02852 230 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Phco3g02852 230 Gene3D - 65 136 - -
Phco3g02852 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 130 - -
Phco3g02852 230 SMART sant 9 59 IPR001005 -
Phco3g02852 230 SMART sant 62 110 IPR001005 -
Phco3g02852 230 FunFam Transcription factor MYB113 65 137 - -
Phco3g02852 230 MobiDBLite consensus disorder prediction 110 133 - -
Phco3g02852 230 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Phco3g02852 230 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Phco3g02852 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Phco3g02852 230 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Phco3g02852 230 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02852 Phco-Chr3 54899534 54900527 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02852 Myb_DNA-binding 2.4e-15 CL0123