Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02840 ATGGGCTGTGCAAGTTCGAAGAAAACTCTTGCCGGAGGCGATTCCACGCCGCCGGGGCTGGGCGTGTTGGCTTCGAGCTCGCGGAAACGGTGCAATGGGAAGAGGCGAAACGGCGTCGTGGAGGCGCGTGAGGGGGACGCAAAATTTGAGGAGACGAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTCCAGTGTCGTTGAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCTGCTGGGTGGCCACCTTGGCTTACCTCTGTTGCTGGGGAAGCCATTCAAGGGTGGGTCCCTCTCAAAGCCGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTCCAAGCACGTGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTACGTTTTGACAAATTTCAAGCCGATAGCATTAGGTTCATGGCGAGAGAAATAATAATTCTTCGTACACTTGACCACCCAAACGTCATGAAATTGGATGGTATTATTACTTCACAACATTCAAACAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTAGCTTCTCCTGATATAAAGTTCACTGACTCACAGATTAAGTGTTACATGAGGCAGTTATTAAGTGGAATTGAGCATTGTCATCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATGAAGGTGTTCTCAAGATAGCAGATTTTGGATTAGCAAATACCCTTAGTCCAAATAGCAAGCGACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTCTTGATGGGATCAACAACTTATGGAGTTTCGGTGGATCTATGGAGTGTGGGTTGTGTATTTGCTGAACTTTTTCTGGGGAGGCCCATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGATCTCCACCAGAGGAGTACTGGAAAAAGAATAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAACCTCTCTTCAAGAGAGGTGTAAAGGTTTTCCTGCACCTGCTGTAAAACTACTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCGCTCACGTCTGAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAGAGGTCGGGAAGATGCGAGCAGGAAAAAGGATGCAGGTAAAGTGAGAGAGGCTGTAACATCAAAAAGGCACAGAAGAGTCCACAAAGTTTCCCATGACCATATAAATTTCAACATACAAGCTTTGAAAGAGGAAATGCAGAATAATTCTCAAAATGCTGGTACAGATGATGGTAGGGCGCATGTTGCAAAAGTTAAAATAGGAGCTTTGCATAAAGAGCAACCAAAGCCTTCATGTGATGAAAATTCTGAGGCTGCCCAAGTGGTGGATGGTTGCAATGGAAACAGTCTATACTCTGGACCAGCACCAGTCTCAGCATCCAGTGGCTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATTGTTCAAGAAGCAAAATCAGTGCTTTGGATCCAACCTTTTCAAAAGGCGCTTATGATTTAACAAAACATGGGATAGAAGTTTCAGAAAGGAAACATAGTTTCAACACAAGGCATAAGGACAGGACTTCCACCTACGTATTACCAATATACCAGCCTCCTCGGATTCAACAAAAATCATTCGATGCAGCTGATACATACAACTCAAATTATTACATGGAATTCGATTTCACAGATAAATCGGATGCTCAGTTAGATAAAGGCCACAGAAAACATGGTGAGCCTGTGAAGCAATCAGCGCCAAAAATGATTTCATCAAATAAAAATGATGAGTTGTTGCAGCGGAATGAAAATAATATGCGGCAATCTCTTCGGATATCAACCTTAAGAAGAGACCAATGA 2013 0.4391 MGCASSKKTLAGGDSTPPGLGVLASSSRKRCNGKRRNGVVEAREGDAKFEETKEWKKGSLRGPVSLRLSCRFVEAEQNAAGWPPWLTSVAGEAIQGWVPLKADSFERLDKIGQGTYSSVFQAREVETGRMVALKKVRFDKFQADSIRFMAREIIILRTLDHPNVMKLDGIITSQHSNSIYLVFEYMEHDLAGLVASPDIKFTDSQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIADFGLANTLSPNSKRPLTSRVVTLWYRPPELLMGSTTYGVSVDLWSVGCVFAELFLGRPILKGRTEVEQLHKIFKLCGSPPEEYWKKNKLPLATMFKPQTNYETSLQERCKGFPAPAVKLLETLLSIDPSKRGTASSALTSEYFSTKPYACDPSLLPKYPPSKEMDARGREDASRKKDAGKVREAVTSKRHRRVHKVSHDHINFNIQALKEEMQNNSQNAGTDDGRAHVAKVKIGALHKEQPKPSCDENSEAAQVVDGCNGNSLYSGPAPVSASSGFTWAKRRKPEASSILSDCSRSKISALDPTFSKGAYDLTKHGIEVSERKHSFNTRHKDRTSTYVLPIYQPPRIQQKSFDAADTYNSNYYMEFDFTDKSDAQLDKGHRKHGEPVKQSAPKMISSNKNDELLQRNENNMRQSLRISTLRRDQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02840 670 Gene3D Phosphorylase Kinase; domain 1 92 187 - -
Phco3g02840 670 MobiDBLite consensus disorder prediction 400 440 - -
Phco3g02840 670 FunFam probable serine/threonine-protein kinase At1g54610 188 429 - -
Phco3g02840 670 CDD STKc_CDK9_like 105 389 - -
Phco3g02840 670 Pfam Protein kinase domain 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02840 670 MobiDBLite consensus disorder prediction 408 430 - -
Phco3g02840 670 Gene3D Transferase(Phosphotransferase) domain 1 188 429 - -
Phco3g02840 670 PANTHER CELL DIVISION PROTEIN KINASE 103 393 - -
Phco3g02840 670 SMART serkin_6 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02840 670 MobiDBLite consensus disorder prediction 621 670 - -
Phco3g02840 670 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02840 670 MobiDBLite consensus disorder prediction 1 39 - -
Phco3g02840 670 SUPERFAMILY Protein kinase-like (PK-like) 99 395 IPR011009 -
Phco3g02840 670 MobiDBLite consensus disorder prediction 637 663 - -
Phco3g02840 670 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Phco3g02840 670 FunFam probable serine/threonine-protein kinase At1g54610 92 187 - -
Phco3g02840 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02840 Phco-Chr3 54823631 54828996 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Phco3g02840 Pkinase 1.4e-68 CL0016