Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02825 ATGGACATAACCCCAACAACAACGATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGACCATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCCACAAAAGCCTTGTCTTTCTCCAACGGGGTCCTCAAGCGCCACCATCACCACCACCACCACCACCACCCCATGTCCGCTGCCGTCACCTACAAAGAATGCCTCAAAAATCACGCTGCCAACTTGGGTGGCCACGCCTTAGATGGCTGCGGCGAGTTCATGCCGTCCCCCACAGCCACTGCTGCCGACCCCAGCTCCATTAAATGTGCAGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCGGATGAGCCGCCCATCGCATCCACCACGCACGTGATCGAGTACCAGCCGCACCATCGCCACCACCCACCGCCTCCGTTCCAGGCGGCAGCGGCGGCGAATCGGAGCCCGAATTCCGCATCCCCGCCGCCGATCTCCTCGTCTTACTACCCCTCCGCGCCGCACATGCTCCTCGCCCTCTCCGCTGGGCTCGCCGCTCCGCCGGAGAGCACGGCCGCACCCTCCACTGCGCTGACCAGAAAGCGCTTCAGAACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCATAAGTTCGCTGATAAAGTAGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGGTTCACGAGTTTTGCAACGAGATTGGCGTGGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATAATAATGTTAATATTACTAGCAATGATGATATTACTAATAATATTAATGATAATGATGCAAATGGGGCTGCCAAGGGTTTTGAGGACCCTAATACCAGCATCGGTGGTGGTGCTGAAGATCGTGGTGAGGATCCGAGTCGCAATCACTTTGGTGGGGTGAACGTTGGTGGTGCTAACGGGTCTTCTTCTACTTCTTGA 978 0.5552 MDITPTTTINNTTPSATTKSPDHDTETPTRINTPTATKALSFSNGVLKRHHHHHHHHHPMSAAVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPDEPPIASTTHVIEYQPHHRHHPPPPFQAAAAANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSTALTRKRFRTKFSQEQKEKMHKFADKVGWKMQKRDEDLVHEFCNEIGVDRSVLKVWMHNNKNTLAKKDNNVNITSNDDITNNINDNDANGAAKGFEDPNTSIGGGAEDRGEDPSRNHFGGVNVGGANGSSSTS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02825 325 Gene3D - 185 259 - -
Phco3g02825 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 256 - -
Phco3g02825 325 MobiDBLite consensus disorder prediction 1 36 - -
Phco3g02825 325 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
Phco3g02825 325 SUPERFAMILY Homeodomain-like 189 258 IPR009057 -
Phco3g02825 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
Phco3g02825 325 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Phco3g02825 325 MobiDBLite consensus disorder prediction 149 163 - -
Phco3g02825 325 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 117 IPR006456 -
Phco3g02825 325 MobiDBLite consensus disorder prediction 133 164 - -
Phco3g02825 325 MobiDBLite consensus disorder prediction 276 325 - -
Phco3g02825 325 FunFam Zinc-finger homeodomain protein 2 185 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02825 Phco-Chr3 54671747 54672724 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco3g02825 ZF-HD_dimer 2.9e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02825 3 54671747 54672724 Phco3g02825 3 54671747 54672724 ECH
Phco5g01649 5 52500000 52501013 Phco3g02825 3 54671747 54672724 PCT