Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02823 ATGGGAAGACCACCTTGCTGTGACAAAGAAGGAGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATATTGGTATCTTATATACAGGAACATGGTCCTGGCAATTGGAGAACTGTTCCTACCAAGACAGGGTTGTCAAGATGTAGTAAGAGTTGTAGACTTAGATGGACAAATTACCTCAGACCAGGAATCAAACGTGGGAACTTCACAGAACAAGAGGAGAAGATGATAATTCACCTTCAAGATCTTTTAGGAAATCGTTGGGCTGCAATAGCTTCATACCTACCACAGAGAACAGATAATGACATAAAGAACTATTGGAACACCCATCTGAGAAAGAAGGTGAAGAAGTTGTTTCAAACAGACAATGAAGGTAGCTTGGGAGAAGAGTTTTCGGCCTCAGGACAAATTCCTAGAGGACAGTGGGAAAGAAGGCTTCAAACTGATATCCAAATGGCAAAAAGAGCTCTCAGTGAAGCTCTTTCTCCAGAAAAGCCATCTTGTTTATCTGGATCAAACTCAAATCCTTCAGATAGTAGTAGTTCTTTCTCTTCCACCAAACCATCTCAATCTTTGTGCTATGCTTCCAGTGCTGAGAACATAGCTCGCATGTTGAAGGGTTGGATGAAAAACCCACCAAAGTCCTCAAGAACCAACTCATCTGTGACTCAGAACTCCTTCAACAACTTAGTGGCAGCAGGTGCTGATACTGCTTCTAGTGGAGCAAAGGGACTGAGCAGTGTTGAATTGTCTGAGAATTTTGAATCCCTGTTTGAGTTTCATCAGTCTTTGGAGTCCTCAAACTCAGATGAGTTCTCTCAGTCCTTTTCTCCGGAGGCCACTGTTTTGCAAGATGAAAGCAAACCTGATATTGGTGCAGAAATAATGCCATTCTCTTTGCTTGAGAAATGGCTTCTTGACGAGGCTGCTTGCCAAGAGAAAGTTGGTTGTGGTGATGACAAATTTTTTTAA 975 0.4236 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRTVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKVKKLFQTDNEGSLGEEFSASGQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCLSGSNSNPSDSSSSFSSTKPSQSLCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLVAAGADTASSGAKGLSSVELSENFESLFEFHQSLESSNSDEFSQSFSPEATVLQDESKPDIGAEIMPFSLLEKWLLDEAACQEKVGCGDDKFF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02823 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 250 - -
Phco3g02823 324 CDD SANT 69 112 IPR001005 -
Phco3g02823 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco3g02823 324 SMART sant 13 63 IPR001005 -
Phco3g02823 324 SMART sant 66 114 IPR001005 -
Phco3g02823 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco3g02823 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco3g02823 324 CDD SANT 16 61 IPR001005 -
Phco3g02823 324 MobiDBLite consensus disorder prediction 270 289 - -
Phco3g02823 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Phco3g02823 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco3g02823 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Phco3g02823 324 MobiDBLite consensus disorder prediction 166 190 - -
Phco3g02823 324 FunFam MYB-related transcription factor 13 66 - -
Phco3g02823 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco3g02823 324 Gene3D - 68 129 - -
Phco3g02823 324 MobiDBLite consensus disorder prediction 162 190 - -
Phco3g02823 324 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02823 Phco-Chr3 54638181 54639438 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02823 Myb_DNA-binding 1.2e-15 CL0123