Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02820 ATGTCTAGCCGAAGATCCAGACAACATTCAGGGTCTACAAGGATCTCCGATGACCAAATCATCGAGCTTGTTTCCAAATTGCGCCAACTTGTTCCTGAGATTCGCAGTAGGCGATCTGACAAGGTTTCAGCGTCCAAGGTCCTACAAGAAACCTGCAACTACATCAGAAGCTTGCACAGAGAGGTGAGTGACTTGAGTGAGCGACTGTCTCAGTTGTTGACCACAATTGATGCAGATAGTGCTGAAGCTGGAATCATTAGGAGCCTACTTAATCAATAA 279 0.4588 MSSRRSRQHSGSTRISDDQIIELVSKLRQLVPEIRSRRSDKVSASKVLQETCNYIRSLHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02820 92 Gene3D - 2 83 IPR036638 GO:0046983
Phco3g02820 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 77 IPR036638 GO:0046983
Phco3g02820 92 FunFam Transcription factor ILI6 5 87 - -
Phco3g02820 92 Coils Coil 55 75 - -
Phco3g02820 92 CDD bHLH_AtPRE_like 10 75 - -
Phco3g02820 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Phco3g02820 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Phco3g02820 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02820 Phco-Chr3 54586992 54588518 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g02820 HLH 4.3e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02820 3 54586992 54588518 Phco3g02820 3 54586992 54588518 ECH
Phco3g02820 3 54586992 54588518 Phco7g02273 7 40050493 40051497 ECH
Phco5g01660 5 52732724 52734386 Phco3g02820 3 54586992 54588518 PCT