Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02816 ATGGCCTTTCCACCTTCTCACAGCTTCACGTTTCACACTCATGAAGAAGATCACCACCACCTCCCTTCAACCTCTCTCAACGCCTACCCCTCTTTGCCACCACAACATTTTCAAGGGGGTGCACCACCATTCATGTTGAAGCGGTCCATGTCGTTTTCAGGCATTGAAAACAAGTGCGATGAGGTGAACGGAGATGATGAGTTATCCGACGATGGGAACTTTCCATGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGTTAAAGGCTCTTGAGAAGAGTTTTGAGTTGGCGAACAAGCTTGAGCCAGAAAGAAAAGTGCACTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCCAGATGGAAAACCAAGCAATTGGAGAAGGAATATGAAGCTCTCAAGAAGCAGTTTGAGGGAGCTAAGGCTGATAATGATGTTCTTAAGATTCAGAATCAGAAACTACAGGCAGAGTTAGAAGCAGTAAAAAGTAGGGGTTGGTATGAAGCTGGAATAATCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAGCTCAGACATTAATTTAGATCTCTCAAGAGCACCAATTTTGAATAATCCTATATCTTGCCAAGCACCCTTTCCCACCAGCATAACTCAGATCCTTCAATATTCGTCAAAACCAGACTTTCAGGATGATGACTTGTGCAACGTGATTCACAACATTGATGTACAACAAAACTTTTGGCCCTGGCCTGGTCAACAGAACCACCATTTCCATTGA 807 0.4374 MAFPPSHSFTFHTHEEDHHHLPSTSLNAYPSLPPQHFQGGAPPFMLKRSMSFSGIENKCDEVNGDDELSDDGNFPCGEKKKRLNLEQLKALEKSFELANKLEPERKVHLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEGAKADNDVLKIQNQKLQAELEAVKSRGWYEAGIISLKKETEGSWSNGSDNSSDINLDLSRAPILNNPISCQAPFPTSITQILQYSSKPDFQDDDLCNVIHNIDVQQNFWPWPGQQNHHFH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02816 268 Coils Coil 126 174 - -
Phco3g02816 268 MobiDBLite consensus disorder prediction 1 34 - -
Phco3g02816 268 CDD homeodomain 79 135 IPR001356 GO:0003677
Phco3g02816 268 SUPERFAMILY Homeodomain-like 74 136 IPR009057 -
Phco3g02816 268 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Phco3g02816 268 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Phco3g02816 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 207 IPR045224 GO:0003700
Phco3g02816 268 ProSiteProfiles 'Homeobox' domain profile. 78 134 IPR001356 GO:0003677
Phco3g02816 268 SMART HOX_1 77 138 IPR001356 GO:0003677
Phco3g02816 268 SUPERFAMILY BAR/IMD domain-like 91 256 IPR027267 -
Phco3g02816 268 Gene3D - 76 144 - -
Phco3g02816 268 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Phco3g02816 268 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Phco3g02816 268 FunFam Homeobox-leucine zipper protein ATHB-13 70 138 - -
Phco3g02816 268 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02816 Phco-Chr3 54535207 54536983 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco3g02816 Homeodomain 1.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02816 3 54535207 54536983 Phco3g02816 3 54535207 54536983 ECH
Phco5g01663 5 52778746 52781147 Phco3g02816 3 54535207 54536983 PCT