Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02792 ATGCAGTTTCCCATTGCCTCTCTCCTCCACCACCTACACCCCCTCTGGACTAATTTTCAGAACTGGTTTTTTGTTTGTGTTTGTTTTTTACCCATTTATCTGTGTACTTGTGTTGATTCCTTTGTTCTGATTCACAACAGTGATGCTCTTCTTTTAGTTCTGTTGATTGTGACTGTGATCACGGTCATGATCATGATATGGGTTGCAGGGTCTTCAATAATTGGAACTCTTTGTAAGAGTTTGTGGAAGATGGGGCTTGGGAATAATGCAATTCAGGCAGGGAGTTTGGATGTGGGTAAGTCAAAGGTAAAGATGCAAAAGGCTGGTGCAGAAAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATACTTCCATCAGTGGCACTAGTGCTAACAGTGTGGAAAAACCATCTGCTTGTGAGAAAAACAAGAAGGAAACAAATGCTCTTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACCCCAAAATTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCCACTAGGAATTTCAGACCGGAGAGTCTTCTTGGCGAGGGAGGGTTTGGATGTGTTTTCAAGGGTTGGATTGAAGAAAATGGTACTGCACCTGTGAAACCTGGTACTGGGCTTACTGTAGCAGTGAAAACTCTCAATCATGATGGGCTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTCATCCATCCGAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTGTTGGTTTATGAATGTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTTCTTTTCTCCATGAAGAAGCTCAGCGGCCTGTAATCTATCGTGATTTTAAGACGTCTAATATTCTGTTAGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTAGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGGCATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTAGAAATGCTGACTGGCCGGCGATCCATTGATAAGAATAGACCAAATGGGGAACACAATCTTGTGGAGTGGGCAAGACCTGTACTCGGGGACCGGAGGATGATACTACGGATTATTGATCCTCGGCTTGAAGGTCACTTCTCTGTTAAAGGAGCACAGAAGGCTGCCCAGTTGGCTGCTCAATGCCTTTGCCGTGATCCAAAATCCAGACCTATGATGAGTGATGTTGTTCAAGCTCTGAAGCATTTGCAAAACCTTAAGGATATGGCTATCTCAACTTATCATTTTCAGGTTGCCCGAGTAGATCGAACCATGTCCATGCCAACTTCTAAACATGGTATGCAAGCACAGTTAACAATATCAAAAAAGGGTCAACCTGCAAGGTCCTTGTCAAGCCCAAAAGGTCCTCATGGTTCTCCATATCATCATTATGTCAAGTCACCAAAACCTAATGGATAA 1677 0.4299 MQFPIASLLHHLHPLWTNFQNWFFVCVCFLPIYLCTCVDSFVLIHNSDALLLVLLIVTVITVMIMIWVAGSSIIGTLCKSLWKMGLGNNAIQAGSLDVGKSKVKMQKAGAEKEIGCCVKFCFIGSCIPSRSKVDTSISGTSANSVEKPSACEKNKKETNALPGSSTTTSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLIHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMILRIIDPRLEGHFSVKGAQKAAQLAAQCLCRDPKSRPMMSDVVQALKHLQNLKDMAISTYHFQVARVDRTMSMPTSKHGMQAQLTISKKGQPARSLSSPKGPHGSPYHHYVKSPKPNG 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02792 558 FunFam Probable serine/threonine-protein kinase PBL8 291 506 - -
Phco3g02792 558 FunFam Serine/threonine-protein kinase BIK1 172 290 - -
Phco3g02792 558 CDD STKc_IRAK 211 489 - -
Phco3g02792 558 Pfam Protein kinase domain 208 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02792 558 SUPERFAMILY Protein kinase-like (PK-like) 179 486 IPR011009 -
Phco3g02792 558 MobiDBLite consensus disorder prediction 158 178 - -
Phco3g02792 558 MobiDBLite consensus disorder prediction 514 558 - -
Phco3g02792 558 MobiDBLite consensus disorder prediction 514 534 - -
Phco3g02792 558 Gene3D Phosphorylase Kinase; domain 1 189 290 - -
Phco3g02792 558 ProSitePatterns Protein kinases ATP-binding region signature. 211 243 IPR017441 GO:0005524
Phco3g02792 558 MobiDBLite consensus disorder prediction 132 178 - -
Phco3g02792 558 MobiDBLite consensus disorder prediction 132 148 - -
Phco3g02792 558 PANTHER OS01G0588500 PROTEIN-RELATED 163 490 - -
Phco3g02792 558 Gene3D Transferase(Phosphotransferase) domain 1 291 508 - -
Phco3g02792 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Phco3g02792 558 ProSiteProfiles Protein kinase domain profile. 205 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02792 Phco-Chr3 54371357 54375002 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco3g02792 Pkinase 4.8e-47 CL0016