Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02787 ATGATGCAGTTTTTGAATTCCAATTTTCTTTGGATATACTTTCTTTTTATTTATGTTTTGCTTTTTGTGAGCTCCGTTTGGGAGTTAAGATCCGCGTCTACACTATCGCAGCTTCAGTTGGAAGCAAATGCTATAATCAATAGTGGATGGTGGAATCTCTCGTCATTAGATTCACATCATATCTGCTCATTGAATCAAGGTATACATTGCAATGATGCTGGAAGTGTAATTCGTATCACATATCCGTGTTTCGAAGGAGGGGTTCAATTATCAACACTAAACCTCTCTGCTTTCAAGAATTTAGAATCCTTTGAGGTCGCCTGTAGTCTACAAGGCACTATCCCACCTGAAATTGGTAGTCTTTCCAAACTGATTTATCTTCATTTATCCTCCAATTATACTCTTCAAGGTGAAATACCTTTTACAATAGGAAATCTTTCTGAACTCACTTATCTTCATTTATCCCACAATTCTTTTCAAGGTGAAATACCTTCCACAATAGGAAATCTTTTCAAACTCACTCATCTTCATTTATCCCACAATTCTCTTCAAGGTAAAATACCTCCCACAATAGGAAATCTTTTCAAACTCATTCATCTTCATTTATCCCACAATTCACTTCAAGGTGAAATACCTTCAACACTAGGAAATTTTTCCAAACTCACTCATCTTCATTTATCCCACAATTCTCTTCAAGGTGAAATACCTCTCACAATAGGAAATCTTTTCAAAGTCACTCATCTTCATTTATTACACAATTCTCTTCAAGGTGAAATACCTCCCACAATAGGAAATCTTTCCAAACTCACTCATCTTCATTTATCCCACAATTCTCTTCATGGTGAAATACCCCTTATAATAGGAAATCTTTCCAAACTCACTCATCTTCATTTATCCCATAATTCTCTTCAAGGTAAAATACCTCCCACAATAGAAAATCTTGCCAAACTCATTCATTTTCATTTATCCCAAAATTCTCTTCATGGTGAAATACCCCCTACAATAGGAAACCTTTCCAAACTCACTGATCTTGATTCATCCTACAATCATCTTCAAGGTGAAATACCTCCTACAATAGGAAATCTTTCAAAACTCACTAATCTTGATTTATCCTACAATTCTCTTCAAGTGCATAGAGACATATCAGCAAGCAACGTGTTGCTTAACTCCAACTGGGAGCCCACTGTTTCTGACTTTGGCACAGCTCGATTTCTGAACCTTGATTCATCCAATCGAACTATGGTCGTTGGAACCATTGGATACATAGCTCCAGAGCTTGCGTATACAATGGTTGTAAATGAAAAGTGTGATGTGTATAGCTTTGGAGTGGTGGCGCTGGAAACTTTGATGGGAAAACATCCTAAGGATATACTCTCATCACTTCAATCAACTTCTACCGTGGCAAAAGGACTTCGCAAAAGTTTAATAAACCGGGTTGATGTTTCAAACATAACAGTCCACTTTGCTTCGTCACGCTTAACTCACCAAACTGTCAAGTCAAATATATGGAACAGGCTTAATCTGTATGATCTGGGAGGTAGAAGAGTTATTGTGACAGGGACAGGACCCATGGGTTGTGCGCCTGCAGAATTGGCTATGCGCGGCAAAAATGGAGAATGTTCAGCTGAGCTACAACGTGCTGCAGCATTGTACAACCCTCAGTTGGAGCAAATGATAGTTGAGCTCAACAACAAAATTGGCACTGTCATTTTCATTGCTGCAAATACAGCACTGATGCACAATGACTTCATCACCAATCCCAAAGCTTATGGATTTGATACATCAAAAGTAGCTTGTTGTGGACAAGGACCCTACAATGGATCCGCGTCTACACCATCGCAGCTTCAATTGGAAGCAGACGCTATAATCAATAGTGGATGGTGGAATATCTCTTCCTCAGATTCACATCATATTTGTTCATTGAATCATCATGGCATACATTGCAATGATGATGGAAGTGTAATTCGTATCAAATATCTGTGTTTTGAAGGACGGATTCAATTAGCAACACTAAACCTCTCTGCTTTCAAGAATTTAGAATTCTTTGAGGTCGCCTACTGTCTAGGAGGGACTATCCCACCTGAAATTGGTAGTCTTTCCAAACTCACTTATCTTGAATTATCCTTCAATGCTCTTCAAGGTGAAATACCTTTCACAATAGGAAATCTTTCCAAACTCACTTTTCTTGATTTATCCCACAATTCTCTTAAAGGTAAAATACCTTCCACAATAGGAAATCTTTCCAAACTCACTCATCTTGATTTATACCACAATTCTCTTAAAGGTAAAATACCTTCCACAATAGGAAATCTTTCCAAACTCATTCAGCTTGATTTATCATACAATTCTCTTAAAGGTAAAATACCTTTCACAATAGGAAACCTTTCCAAACTCACTTATCTTGATTTATCCTATAATTCTCTTCAAGATGAAATACCTAGCACAATAAGAAATCTAACCCAACTACGGAGCCTAGTAATCTCTAACAACTACATTGAAGGCTCCATTCCTTTTGAATTGTCATTCTTGCGAAATCTTAGAGATGTAGATCTATCTTACAATAAAATCAATGGAATCTTGTCCTTTTCACATTCAAACCTCACGAACTTTCAAAATCTAGACGTTTCACATAATCTGCTCACTGGTTCCCTAAAACCCTTCTCAGATAGAGATTTTTCATTCTTAAAAAGTCTGGATCTAAGCTACAATAATCTTACCGGACTGCCTCTTGTTTTGAATGCCTATAATGTGGACCTTTCCTTCAATAATTTGAAGGGTCCCATTCCAAATGGTTTAAATCCATATGCACTAAGAGGAAACAAGGGTGTATGCAGCGACATTTTAGATATACAAACCATATACCAATTCCAACCTTGTTCAGTCCACCAAAAACTAATGCAAAATCAGAATCAACTGGTCATAATTCTTTCTATCACTAGTTTTCTAATCATTGCATTCTTACTACTTCTATATTTGAGGCTCAATCGTGTTGCAATCAAGAACAAACATGCAAGGGTTAACACAGTGAAAGGCACTGCACATGCTCTCTCATATCTTCATCATGATTGTGTCCCTCCAATAGTGCATAGAGACATATCAGCAAACAATGTGTTGCTTAACTCCAACTGGGAGCCGACTGTATCTGACTTTGGCACAGCTCAATTTCTCAATCTTGATTCATCCAATCAAACTATAGTTGCTGGAACCATTGGATACATAGCTCCAGAGCTTGCGTATACAATGGTTGTGAATGAAAAATGTGATGTGTATAGCTTCGGAGTGGTAGCGTTGGAAACTTTGATGGGAAAACATCCAAAGGAAATATTCTCATCACTTCAATCAACTTTTACAGATGATGACATCAAATTATGTGAAATATTGGATCAACGCCTCCCACACCCAACATTTTCAATTTTACAAGACATAGTTGTTGTTGCCATTGTGGCTTTTGCGTGCTTAAATCCCAATCCTTGCTCTCGCCCAACAATGAAATGCATCTCTCAATGTTTTCTTACTCAGCTCACACCATTCAACATTCCTTTACGTCATATTTCATTGCAACAACTCATGAGTCGAGAACTCACCCACTACTTAAAATTAAGAACATTTTGA 3612 0.3749 MMQFLNSNFLWIYFLFIYVLLFVSSVWELRSASTLSQLQLEANAIINSGWWNLSSLDSHHICSLNQGIHCNDAGSVIRITYPCFEGGVQLSTLNLSAFKNLESFEVACSLQGTIPPEIGSLSKLIYLHLSSNYTLQGEIPFTIGNLSELTYLHLSHNSFQGEIPSTIGNLFKLTHLHLSHNSLQGKIPPTIGNLFKLIHLHLSHNSLQGEIPSTLGNFSKLTHLHLSHNSLQGEIPLTIGNLFKVTHLHLLHNSLQGEIPPTIGNLSKLTHLHLSHNSLHGEIPLIIGNLSKLTHLHLSHNSLQGKIPPTIENLAKLIHFHLSQNSLHGEIPPTIGNLSKLTDLDSSYNHLQGEIPPTIGNLSKLTNLDLSYNSLQVHRDISASNVLLNSNWEPTVSDFGTARFLNLDSSNRTMVVGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLMGKHPKDILSSLQSTSTVAKGLRKSLINRVDVSNITVHFASSRLTHQTVKSNIWNRLNLYDLGGRRVIVTGTGPMGCAPAELAMRGKNGECSAELQRAAALYNPQLEQMIVELNNKIGTVIFIAANTALMHNDFITNPKAYGFDTSKVACCGQGPYNGSASTPSQLQLEADAIINSGWWNISSSDSHHICSLNHHGIHCNDDGSVIRIKYLCFEGRIQLATLNLSAFKNLEFFEVAYCLGGTIPPEIGSLSKLTYLELSFNALQGEIPFTIGNLSKLTFLDLSHNSLKGKIPSTIGNLSKLTHLDLYHNSLKGKIPSTIGNLSKLIQLDLSYNSLKGKIPFTIGNLSKLTYLDLSYNSLQDEIPSTIRNLTQLRSLVISNNYIEGSIPFELSFLRNLRDVDLSYNKINGILSFSHSNLTNFQNLDVSHNLLTGSLKPFSDRDFSFLKSLDLSYNNLTGLPLVLNAYNVDLSFNNLKGPIPNGLNPYALRGNKGVCSDILDIQTIYQFQPCSVHQKLMQNQNQLVIILSITSFLIIAFLLLLYLRLNRVAIKNKHARVNTVKGTAHALSYLHHDCVPPIVHRDISANNVLLNSNWEPTVSDFGTAQFLNLDSSNQTIVAGTIGYIAPELAYTMVVNEKCDVYSFGVVALETLMGKHPKEIFSSLQSTFTDDDIKLCEILDQRLPHPTFSILQDIVVVAIVAFACLNPNPCSRPTMKCISQCFLTQLTPFNIPLRHISLQQLMSRELTHYLKLRTF 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02787 1203 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 187 384 - -
Phco3g02787 1203 Pfam GDSL-like Lipase/Acylhydrolase 500 605 IPR001087 GO:0016788
Phco3g02787 1203 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 672 955 - -
Phco3g02787 1203 Pfam Leucine Rich repeat 894 907 IPR001611 GO:0005515
Phco3g02787 1203 Pfam Protein kinase domain 993 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02787 1203 Pfam Protein kinase domain 376 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02787 1203 ProSiteProfiles Leucine-rich repeat profile. 845 866 IPR001611 GO:0005515
Phco3g02787 1203 PRINTS Leucine-rich repeat signature 795 808 - -
Phco3g02787 1203 PRINTS Leucine-rich repeat signature 726 739 - -
Phco3g02787 1203 FunFam Piriformospora indica-insensitive protein 2 92 186 - -
Phco3g02787 1203 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 666 996 - -
Phco3g02787 1203 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515
Phco3g02787 1203 Pfam Leucine Rich Repeat 725 747 IPR001611 GO:0005515
Phco3g02787 1203 SMART LRR_typ_2 290 313 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 747 771 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 699 722 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 795 819 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 266 289 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 170 194 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 362 384 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 892 915 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 723 746 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 218 242 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 843 864 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 146 169 IPR003591 -
Phco3g02787 1203 SMART LRR_typ_2 314 338 IPR003591 -
Phco3g02787 1203 ProSiteProfiles Protein kinase domain profile. 870 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02787 1203 SMART LRR_sd22_2 699 725 - -
Phco3g02787 1203 SMART LRR_sd22_2 843 875 - -
Phco3g02787 1203 SMART LRR_sd22_2 747 773 - -
Phco3g02787 1203 SMART LRR_sd22_2 290 316 - -
Phco3g02787 1203 SMART LRR_sd22_2 795 821 - -
Phco3g02787 1203 SMART LRR_sd22_2 362 383 - -
Phco3g02787 1203 ProSiteProfiles Protein kinase domain profile. 207 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02787 1203 SUPERFAMILY L domain-like 54 380 - -
Phco3g02787 1203 Gene3D Transferase(Phosphotransferase) domain 1 374 510 - -
Phco3g02787 1203 Gene3D Ribonuclease Inhibitor 23 373 IPR032675 -
Phco3g02787 1203 Gene3D Ribonuclease Inhibitor 629 953 IPR032675 -
Phco3g02787 1203 SUPERFAMILY Protein kinase-like (PK-like) 377 476 IPR011009 -
Phco3g02787 1203 Gene3D Transferase(Phosphotransferase) domain 1 991 1175 - -
Phco3g02787 1203 SUPERFAMILY Protein kinase-like (PK-like) 1003 1169 IPR011009 -
Phco3g02787 1203 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1027 1039 IPR008266 GO:0004672|GO:0006468
Phco3g02787 1203 Pfam Leucine rich repeat 749 808 IPR001611 GO:0005515
Phco3g02787 1203 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Phco3g02787 1203 ProSiteProfiles Leucine-rich repeat profile. 894 915 IPR001611 GO:0005515
Phco3g02787 1203 SUPERFAMILY L domain-like 631 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02787 Phco-Chr3 54247923 54262926 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g02787 Pkinase 1.9e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02787 3 54247923 54262926 Phco3g02787 3 54247923 54262926 ECH