Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02781 ATGGCTGAAAAAGATGATGGGGTTGGGTTGAGTTTGAGTCTGAGTCTGGGAGTGAATCAACAACCTTTGAAGGTGAATCACATGCACCATCCTCAACACCAACCCCAACCCCAACCCCAACCTGTTCCCATAAATCACAACAAAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATAGGAGCTCCGATGTGATACGAGGAATTGAATTGAAATCGGCAGCGTACTGCGAGGAAGACAACGGCATTTCCTCGCCGAACAGCGCGGTGTCGAGCGTTAGCGGCAGCAAGCGGAGCGAGAGGGACGACGATAATGCTGCGATGGTGGCCGGAGAGAGGACCTCGTGCTCGCGGGGGAGCGATGATGACGATGGCGGCGGTGGAGACGGCGATGGCGGAAGAAAGAAACTGAGGCTGACTAAAGAACAGTCCATGGTGTTGGAAGAAACGTTCAAGGAGCATAACACACTCAATCCGAAACGAAAGCAAGCTTTGGCTGAGGAGTTGAATCTGAAGCCTAGACAAGTAGAAGTGTGGTTTCAGAACAGAAGGGCAAGAACCAAGTTGAAGCAAACTGAAGTGGATTGTGAAGTATTGAAGAGATGTTGTGAGAATCTAACTGAAGAGAATAGAAGGTTGGTGAAGGAGGTCCAAGAGCTTAGGGCATTGAAATCATCCCCACAAATGTACATGCACATGAACCCTCCCACCACTCTCACAATGTGCCCCTCTTGTGAGCGTGGTCACTCCTCTTCATCCTCCTCTCCTGCCACCGTCCATTCGTCAGCCCCGACTACTCGCAAACTGTTTGGGGCAAACATCCGGCGGCCGGTAGCGGTCAACACTTGGCCATTTGATGGCTCAATTCCTCGGCAATAA 876 0.5068 MAEKDDGVGLSLSLSLGVNQQPLKVNHMHHPQHQPQPQPQPVPINHNKTLFADLFQLPDRSSDVIRGIELKSAAYCEEDNGISSPNSAVSSVSGSKRSERDDDNAAMVAGERTSCSRGSDDDDGGGGDGDGGRKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLVKEVQELRALKSSPQMYMHMNPPTTLTMCPSCERGHSSSSSSPATVHSSAPTTRKLFGANIRRPVAVNTWPFDGSIPRQ 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02781 291 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Phco3g02781 291 MobiDBLite consensus disorder prediction 79 94 - -
Phco3g02781 291 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Phco3g02781 291 FunFam Homeobox-leucine zipper protein 18 118 194 - -
Phco3g02781 291 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634
Phco3g02781 291 Gene3D - 137 187 - -
Phco3g02781 291 MobiDBLite consensus disorder prediction 115 135 - -
Phco3g02781 291 SMART HOX_1 131 193 IPR001356 GO:0003677
Phco3g02781 291 CDD homeodomain 133 190 IPR001356 GO:0003677
Phco3g02781 291 MobiDBLite consensus disorder prediction 243 263 - -
Phco3g02781 291 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Phco3g02781 291 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Phco3g02781 291 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Phco3g02781 291 MobiDBLite consensus disorder prediction 21 45 - -
Phco3g02781 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 262 - -
Phco3g02781 291 MobiDBLite consensus disorder prediction 78 135 - -
Phco3g02781 291 SUPERFAMILY Homeodomain-like 117 190 IPR009057 -
Phco3g02781 291 Coils Coil 188 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02781 Phco-Chr3 54177933 54180527 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco3g02781 HD-ZIP_N 2.7e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02781 3 54177933 54180527 Phco3g02781 3 54177933 54180527 ECH