Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02752 ATGGACTCCATCAAGATTCTAGCCTTATGGCGGATTCTCTCCTCCTTTCTTTTGGCCTTTCTAACACACTCTTCACTCCAACTTGCTTGGTTTTCCAAAACAGTAGCTTTTGCCTCTGCTGCCAGCACAGGAACTGTTGCTGCAGCTGATAACAATGAAGCAAATGCACTGTTGAAGTGGAAACACAGCTTTGATAATAGCAGCCAAGATCTCTTGTCAACTTGGACAGGTTCTACTTCATGCCAATGGCAAGGAATTCAGTGTGACAAATCCATGTTCGTCTCCAGCATAAATCTTGCAAATTATGGACTGACAGGTACACTTTCCACCCTCAACTTCTCCGCTTTTCCCAACCTCCTCATCTTAAACATCTTCAACAACTCCTTTTATGGGACCATTCCCCGACAAATTGGTAACTTGTCCAAAGTAAATGTTTTGAATCTTTCATCAAATTATTTCCACGGTTCCATACCTCAAGAAATGTGGGCATTAAGAAGTTTACAAGGCCTTGATCTTTACCAATGTCAACTAAATGGAGAGATTCCTAATTCCATAGCCAACTTGTCCAACTTGTCATATCTAGATTTAGGAATAAACAATTTTTCTGGCTACATTCCACCAGAGATTGGAAAGTTGTACAAGTTAGAGTATCTAAACTTTAAACGTAATAAACTTTCTGGTTCCATTCCTCAAGAAATTTCAATGCTGAGAAACCTTAGGAATTTTGATTTGTCATTAAATTCTCTCTCTGGTGCTATCCCTGAAAAAATAGGCAACATGAGTAATTTAAATCAACTTCGCCTTTCTAATAACTCCCTTCTATCTGGGCCAATCCCATCCTCCTTATGGACCATGTCTAACTTGACCTTGCTCTTTCTTGATAACAATAATCTTTCTGGATCAATCCCTGCTTCCATAGGAAACTTGGTCAATTTACAGAAACTTGGACTTGATTACAACCACCTTTCCGGACCTATTCCTTCCACAATTGGAAACTTGACCAAGCTCACCAAGTTGTTTTTACGCTCTAACAATCTTTCTGGATCAATTCCTCCCTCTATAGGAAATTTGAACAATTTGGTATTACTTAGTCTCCAATACAACAATCTCTCCGGAACAATTCCTGCCACAATCGGAAATTTGAAAAACCTCACCATTTTAGAACTGTCCTTCAACAAACTTAATGGCAGCGTTTCACAGGTCTTGAATAACATTCGGAACTGGTCTTCCGTCTTACTTGCTGAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGGGTCCCTAGCATCCCTTAGTGCTCATAAAAACCATTTCACTGGTCCAGTGCCAATAAGCTTAAAGAACTGTCCTAGCATTACTAGACTCAGGCTGGAAGGCAACCAATTGGAAGGAGATGTAGCACAGGATTTTGGTGTATATCCAAATTTGGTATACATTGATTTGAGCGACAATAAGTTGTACGGCCAAATTTCACCAAACTGGGGGAAGTGTCCTAATCTTGGTACCTTAAAGATATCCAACAATAACATTTCTGGTGGTATACCAGTAGAACTTGTTGAGGCAACCAACCTAGGCAAGCTTCACCTTTCTTCTAACCACTTGAATGGAAAGATTCCAAAGGAATTAGGGAATATGAAATCCTTAATTGAACTCAAGATTAGCAACAACCATCTTTCTGGAAACATTCCAAAAGAAATCGGATCCCTGAAAATTCTGGAACAGTTGGATCTTGCAGATAACCAGTTGAGTGGAACAATACCAATAGAAGTTGTAGAATTGTCCAAGTTACGAAACTTGACTTTGAGCAATAATAAAATAAACGGAAATATTCCCTTGGAGTTTAGCCAATTTCAGCCTCTTGAATATCTTGATCTTAGTGGGAATTTGTTGAGTGGAACTATACCGAGACAGCTTGGAGAGTTAATGCAACTGCAATGGCTGAATCTCTCTCACAATAATCTTTCTGGAAATATTCCATCCAGTTTTGATGGCATTTCAGGTTTGATTTCGGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCGAATAATGAAGCCTTTCTTAATGCTTCTGTGGAATCACTGAAAAACAACAGAGGCTTGTGTGGCAACCTCACTGGCCTGATTCTTTGCCCAACCAACCACAGTCAGAAGAGGCACAAGGGCATTCAAATAGCATTATTCATTGCCTTGGGTGCTTTTGTTCTAGTATTATGTGGGGTGTCAGTTTCAATGTATATTCTCTGTCGTAAAATAAGAAAGAAAGATATACATGCTAAAGAAAATGTAGATTCAGGAAAAGCACTGTCTGAAGAAGTGTTTTCCATATGGAGTCACGATGGAAAAATTATGTTTGAAAATATCATTGAAGCTACCGATAATTTCAACGAAAAATATCTGATTGGACTTGGAGGGCAAGGATCTGTTTACAAAGCTGAGATGCATACAGGCCAGGTTTTTGCGGTGAAGAAACTTCATTTGGAAACAGATGAAGAGAAGCCTAATTTTAAAGCTTTTGAAAAAGAAATTCTAGCTCTGACAGAAATCAGGCACCGTAACATTGTAAAGCTGTGTGGATTTTGCTCACATTCACGGTTCTCATTTTTGGTCTACGAGTTCTTGGAAGGGGGTAGCTTGGATCAAATACTAATCAATGAAAAAAAAGCAGCTGCATTTGAGTGGGAAGTAAGGGTAAATGTTGTTAAAGGTGTGGCCTATGCTTTATCCTATATGCATCACGATTGCTCACCACCAATAATTCACCGAGACATATCCAGCAAGAATATTCTTTTAGATTCACAAAAAGAAGCTCATATCTCTGATTTTGGAACAGCTAAGATTCTAAAACCTGGTTCACGCACTTGGACCACGTTTGCAGGCACCTTTGGGTATGCAGCTCCAGAGCTTGCCCTGACTAGGGAAGTGACTGAGAAATGTGATGTATTCAGTTTTGGAGTGCTTTGTCTAGAAATCATTATGGGTAAGCATCCGGGGGATCTCATGTCTTCGTTGTTATCTGAATCTTCAGCAGCAATAACTCATAACTTGCTACTAATTGATGTACTAGACCAAAGACCTCCTCATCCTCCTAAATGGGTTGTTGGGGAAGTCATTTTGGTTGCAAGCTTGGCATTTTCTTGCTTGAGTGAAAATCCATGTTCTCGTCCAACCATGGATCAAGTGTCCAAAAAGCTTATGATGGGTAAATCACCTTTAGCAGATGAGTTCCCTAAGATCAGACTTGCACAACTCCTCTAA 3273 0.3963 MDSIKILALWRILSSFLLAFLTHSSLQLAWFSKTVAFASAASTGTVAAADNNEANALLKWKHSFDNSSQDLLSTWTGSTSCQWQGIQCDKSMFVSSINLANYGLTGTLSTLNFSAFPNLLILNIFNNSFYGTIPRQIGNLSKVNVLNLSSNYFHGSIPQEMWALRSLQGLDLYQCQLNGEIPNSIANLSNLSYLDLGINNFSGYIPPEIGKLYKLEYLNFKRNKLSGSIPQEISMLRNLRNFDLSLNSLSGAIPEKIGNMSNLNQLRLSNNSLLSGPIPSSLWTMSNLTLLFLDNNNLSGSIPASIGNLVNLQKLGLDYNHLSGPIPSTIGNLTKLTKLFLRSNNLSGSIPPSIGNLNNLVLLSLQYNNLSGTIPATIGNLKNLTILELSFNKLNGSVSQVLNNIRNWSSVLLAENDFTGHLPPQICSAGSLASLSAHKNHFTGPVPISLKNCPSITRLRLEGNQLEGDVAQDFGVYPNLVYIDLSDNKLYGQISPNWGKCPNLGTLKISNNNISGGIPVELVEATNLGKLHLSSNHLNGKIPKELGNMKSLIELKISNNHLSGNIPKEIGSLKILEQLDLADNQLSGTIPIEVVELSKLRNLTLSNNKINGNIPLEFSQFQPLEYLDLSGNLLSGTIPRQLGELMQLQWLNLSHNNLSGNIPSSFDGISGLISVNISYNQLEGPLPNNEAFLNASVESLKNNRGLCGNLTGLILCPTNHSQKRHKGIQIALFIALGAFVLVLCGVSVSMYILCRKIRKKDIHAKENVDSGKALSEEVFSIWSHDGKIMFENIIEATDNFNEKYLIGLGGQGSVYKAEMHTGQVFAVKKLHLETDEEKPNFKAFEKEILALTEIRHRNIVKLCGFCSHSRFSFLVYEFLEGGSLDQILINEKKAAAFEWEVRVNVVKGVAYALSYMHHDCSPPIIHRDISSKNILLDSQKEAHISDFGTAKILKPGSRTWTTFAGTFGYAAPELALTREVTEKCDVFSFGVLCLEIIMGKHPGDLMSSLLSESSAAITHNLLLIDVLDQRPPHPPKWVVGEVILVASLAFSCLSENPCSRPTMDQVSKKLMMGKSPLADEFPKIRLAQLL 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02752 1090 Pfam Leucine rich repeat N-terminal domain 51 89 IPR013210 -
Phco3g02752 1090 Pfam Leucine rich repeat 335 394 IPR001611 GO:0005515
Phco3g02752 1090 Pfam Leucine rich repeat 599 658 IPR001611 GO:0005515
Phco3g02752 1090 FunFam Leucine-rich repeat receptor protein kinase MSP1 763 878 - -
Phco3g02752 1090 Gene3D Ribonuclease Inhibitor 49 203 IPR032675 -
Phco3g02752 1090 Gene3D Ribonuclease Inhibitor 204 302 IPR032675 -
Phco3g02752 1090 Gene3D Ribonuclease Inhibitor 303 406 IPR032675 -
Phco3g02752 1090 Gene3D Transferase(Phosphotransferase) domain 1 879 1079 - -
Phco3g02752 1090 SMART LRR_sd22_2 236 262 - -
Phco3g02752 1090 SMART LRR_sd22_2 285 311 - -
Phco3g02752 1090 SMART LRR_sd22_2 573 594 - -
Phco3g02752 1090 SMART LRR_sd22_2 597 618 - -
Phco3g02752 1090 SMART LRR_sd22_2 333 359 - -
Phco3g02752 1090 SMART LRR_sd22_2 621 647 - -
Phco3g02752 1090 SMART LRR_sd22_2 381 407 - -
Phco3g02752 1090 SUPERFAMILY RNI-like 350 691 - -
Phco3g02752 1090 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 405 720 - -
Phco3g02752 1090 Gene3D Ribonuclease Inhibitor 407 725 IPR032675 -
Phco3g02752 1090 PANTHER LEUCINE RICH REPEAT KINASE 2 354 1074 - -
Phco3g02752 1090 SMART LRR_typ_2 549 573 IPR003591 -
Phco3g02752 1090 SMART LRR_typ_2 597 620 IPR003591 -
Phco3g02752 1090 SMART LRR_typ_2 236 260 IPR003591 -
Phco3g02752 1090 SMART LRR_typ_2 645 668 IPR003591 -
Phco3g02752 1090 SMART LRR_typ_2 140 164 IPR003591 -
Phco3g02752 1090 SMART LRR_typ_2 188 212 IPR003591 -
Phco3g02752 1090 SMART LRR_typ_2 285 309 IPR003591 -
Phco3g02752 1090 SMART LRR_typ_2 381 404 IPR003591 -
Phco3g02752 1090 SMART LRR_typ_2 333 357 IPR003591 -
Phco3g02752 1090 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 276 376 - -
Phco3g02752 1090 SUPERFAMILY Protein kinase-like (PK-like) 786 1070 IPR011009 -
Phco3g02752 1090 FunFam MDIS1-interacting receptor like kinase 2 isoform A 50 205 - -
Phco3g02752 1090 SUPERFAMILY RNI-like 96 404 - -
Phco3g02752 1090 Gene3D Phosphorylase Kinase; domain 1 761 878 - -
Phco3g02752 1090 FunFam MDIS1-interacting receptor like kinase 2 879 1076 - -
Phco3g02752 1090 Pfam Protein kinase domain 801 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02752 1090 ProSitePatterns Tyrosine protein kinases specific active-site signature. 924 936 IPR008266 GO:0004672|GO:0006468
Phco3g02752 1090 ProSiteProfiles Protein kinase domain profile. 800 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02752 Phco-Chr3 53919845 53923359 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g02752 Pkinase 9.7e-47 CL0016