Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02749 ATGGAATGCACGTTTGAAAGGGAAAAGTCCATGCTGGTTTTATTTCTTTGTGTCTTTCTAACACTCTCGGGGCCACAAGCTGCAGCTGAAGACAGTGAAGCAAATGCTTTGTTGAATTGGAAACACAGCTTTGACAACCACAGCCAAGCTCTCTTGTCAACATGGAGAGGTAATAATCCATGCACATGGGAAGAAATTCAGTGTGACAAATCTAAGTCTGTGTCCAGCATAAATCTTGCTAACCATGGACTTAAAGGTACACTCCACACTCTCAGCTTCTCCATTTTTCCTAACCTTCTCAGCCTGAATATCTATGGAAACTCCTTTCATGGAACCATTCCACCACAGATTGGTAACATAACCAAAGTAATTAATGCTTTAAATTTTTCTTTAAATTCTTTCCACGGTTCCATCCCTCCAGAAATGTGGACACTAGGGAGTTTACAAGGCCTTGATCTTTCCTTGTGTCACCTAAGTGGAGAGATTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATATCTGGATTTAGGTGGCAACAATTTTTCTAGCTCCATTCCTCCAGGGATTGGAAAGTTGCACAAGTTGGAGTATCTTGGTTTGGGAGAGTGTCACCTTTTTGGTTCCATTCCTCAAGAAATTGGAATGTTGACAAACCTTGAACTTATTGATTTGTCAAGAAACTCTCTTTCTGGTTCTATCCCTGAAACAATAGGTAACATGAGCAGTTTAAATCAACTTTACCTTTCTAATAATTCCCTAATATCTGGGCCAATCCCATCCTCCTTATGGAAGATGTCTAACTTGACCTTGCTCTACGCTGAAGCCAATAATCTTTCTGGATCAATCCCTGCTTCCATAGAAAATCTGGCCAATTTAGAGGAACTTGGACTTGATATCAATCAATTTTCCGGACCCATTCCTTCCACCATTGGAAACTTGACAAAGCTCACCATGTTGTATTTAGGCTTTAATAATCTTTCTGGATCAATTCCTCCCTCTATAGGTAATTTGATCAATTTGGATGCCCTAAGTCTCCAAGCAAACAATCTCTCTGGACCAATTCCTGACACAATTGGAAAATTGAAAATGCTCACCGTTTTGGAATTGTCCACTAACAAACTTAATGGCACCATTCCACAAGGCTTGAATGATATTACCAACTGGTATTCCTTGTTACTCGCTGAGAATGATTTCACAGGCCATTTACCTCCTCAAATTTGCTCGGCTGGATCACTAGAGTTCTTTAATGTTTTTGACAACCGTTTCACGGGTCCAGTGCCAAGAAGCTTAAAGAATTGCTCTAGTATTGCTAGACTCAGGATGGAACGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGAAGTACATTGATTTGAGTGACAATAAATTTCATGGTCACATTTCACCAAACTGGGGAAAGTGCCACAGTCTTAATACCTTCAAGATATCCAACAATAATATTTCCGGTGGTATACCGATAGAACTTGTTGAGGAAACCAAGCTAGGTGTGCTTCACCTTTCTTCTAATCATTTGAGTGGAAAGCTTCCAAAGGAATTAGGGAATATGGAATCGTTATTTCAACTCAAGATTAGCAATAACCATCTTTCTGGAAACATTCCAACAGAATTTGGATTACTGAAAAATCTTGAAGAATTGGATCTGGGAGATAACCACCTGAGTGGCACAATACCAATAGAAGTTGTGAAATTGCACAAGTTACGGAATTTGAATTTGAGTAAAAACAAAATTGATGGAAGCATTCCCTCTCAGTTTAGCCAATCCTTAGTATCTCTTGATCTTAGTGCCAATTTGTTGACTGGAACAATACCAACAAATATTGGAGAGTTGCAAAACTTGTTCATGTTGAATCTCTCACATAATAGTCTTTTTGGCACCATTCCTTCCACTTTTAGCAGAGGATTGAGTATCTTCAACATATCAGACAACCAATTAGAAGGGCCAATTCCAAATATTCCACTTTTTCTTGATGCCCCAATTGAATCATTGAAAAATAATAAAGGCTTATGTGGTAATGTCACGGGATTGGTTCTTTGTCCAACCAACCATAATCGACAGAGAAACAAAGTGATCCTAGAGGCACTCCTTAGTTTAGGAGCTCTAGTACTAGTGCTATGTGGGGTGGCACTTTCAATGTATATTTTTCGTCGTGGTAAAAGAAGAAGAGAAAGTCATTCTAATTCTGAAGAAGCGCCAAGGAAAGTACTCTTTTCCATATGGAGCTACGATGGGAAAATGATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGGAGCAGGAAGTCAAGGATATGTTTACAAGGTGGTGTTGCCTTCAGGTTTGGTTGTTGCTGTGAAGAAACTTCATTCAGTGATAAATGAGGAAATGTCAGATTTTAGTTCAAAGGCTTTTGCAAGTGAGATTAAAGCATTGACAGAAATCAAACATCGGAACATTATAAAGTTGCATGGATTTTGCTCACATTCACAGGTCTCATTTTTGGTCTATCAGCTCATGGAAGGGGGTAGCTTGGATCAATTGCTGAACAAAGATACACAAGCAACGGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTATGGCCAATGCTTTATCTTATTTGCACCATGATTGCTCACCTCCAATTATTCATCGGGACATATCAAGTAAAAATGTTCTTTTGGATCTTGAGTATGAAGCTCATGTCTCTGACTTTGGGACTGCTAAGTTTTTGAAGCCTAGTTCAGACAGTTGGACTCAACTCGTAGGCACCTTTGGATATGCTGCTCCAGAGTTGGCCCAGACAATGGAAGTGAATGAGAAATGTGATGTTTATAGCTTTGGAGTACTTGCTTTGGAAATCATTATGGGAAAACATCCAAGAGATCTCATTTCTCAATTTGTGTCACCTTCTATGGCACCAATTGTTCATGATTTGCTATTGGCTGATGTTTTAGATCAACGGCCTCCTCAACCTACAAAACCAATTGATGGGGAGGTGATCTTAATCGTAAGGTTAGCACTTGCTTGCTTGAGTCAAAATCCACGTTCCCGCCCAACCATGGAACAAGTATCCAAGGCATTTGGAACAGGAAAATCACCTTTGCCTGACCTATTTCCTATGATCAAACTGGGACAACTCTGCTGA 3195 0.3931 MECTFEREKSMLVLFLCVFLTLSGPQAAAEDSEANALLNWKHSFDNHSQALLSTWRGNNPCTWEEIQCDKSKSVSSINLANHGLKGTLHTLSFSIFPNLLSLNIYGNSFHGTIPPQIGNITKVINALNFSLNSFHGSIPPEMWTLGSLQGLDLSLCHLSGEIPNSIANLSNLSYLDLGGNNFSSSIPPGIGKLHKLEYLGLGECHLFGSIPQEIGMLTNLELIDLSRNSLSGSIPETIGNMSSLNQLYLSNNSLISGPIPSSLWKMSNLTLLYAEANNLSGSIPASIENLANLEELGLDINQFSGPIPSTIGNLTKLTMLYLGFNNLSGSIPPSIGNLINLDALSLQANNLSGPIPDTIGKLKMLTVLELSTNKLNGTIPQGLNDITNWYSLLLAENDFTGHLPPQICSAGSLEFFNVFDNRFTGPVPRSLKNCSSIARLRMERNQLEGDIAQDFGVYPNLKYIDLSDNKFHGHISPNWGKCHSLNTFKISNNNISGGIPIELVEETKLGVLHLSSNHLSGKLPKELGNMESLFQLKISNNHLSGNIPTEFGLLKNLEELDLGDNHLSGTIPIEVVKLHKLRNLNLSKNKIDGSIPSQFSQSLVSLDLSANLLTGTIPTNIGELQNLFMLNLSHNSLFGTIPSTFSRGLSIFNISDNQLEGPIPNIPLFLDAPIESLKNNKGLCGNVTGLVLCPTNHNRQRNKVILEALLSLGALVLVLCGVALSMYIFRRGKRRRESHSNSEEAPRKVLFSIWSYDGKMMFENIIEATENFDDKYLIGAGSQGYVYKVVLPSGLVVAVKKLHSVINEEMSDFSSKAFASEIKALTEIKHRNIIKLHGFCSHSQVSFLVYQLMEGGSLDQLLNKDTQATAFDWEKRVNVVKGMANALSYLHHDCSPPIIHRDISSKNVLLDLEYEAHVSDFGTAKFLKPSSDSWTQLVGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIMGKHPRDLISQFVSPSMAPIVHDLLLADVLDQRPPQPTKPIDGEVILIVRLALACLSQNPRSRPTMEQVSKAFGTGKSPLPDLFPMIKLGQLC 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02749 1064 FunFam Leucine-rich repeat receptor protein kinase MSP1 734 852 - -
Phco3g02749 1064 SMART LRR_sd22_2 169 201 - -
Phco3g02749 1064 SMART LRR_sd22_2 314 340 - -
Phco3g02749 1064 SMART LRR_sd22_2 217 243 - -
Phco3g02749 1064 SMART LRR_sd22_2 266 292 - -
Phco3g02749 1064 SMART LRR_sd22_2 362 385 - -
Phco3g02749 1064 SMART LRR_sd22_2 600 626 - -
Phco3g02749 1064 SMART LRR_sd22_2 554 586 - -
Phco3g02749 1064 FunFam Nuclear pore complex protein NUP107 30 187 - -
Phco3g02749 1064 Gene3D Phosphorylase Kinase; domain 1 733 851 - -
Phco3g02749 1064 FunFam MDIS1-interacting receptor like kinase 2 853 1050 - -
Phco3g02749 1064 Pfam Leucine rich repeat 196 254 IPR001611 GO:0005515
Phco3g02749 1064 Pfam Leucine rich repeat 580 637 IPR001611 GO:0005515
Phco3g02749 1064 SMART LRR_typ_2 314 338 IPR003591 -
Phco3g02749 1064 SMART LRR_typ_2 624 648 IPR003591 -
Phco3g02749 1064 SMART LRR_typ_2 217 240 IPR003591 -
Phco3g02749 1064 SMART LRR_typ_2 578 602 IPR003591 -
Phco3g02749 1064 SMART LRR_typ_2 241 266 IPR003591 -
Phco3g02749 1064 SMART LRR_typ_2 362 386 IPR003591 -
Phco3g02749 1064 SMART LRR_typ_2 169 193 IPR003591 -
Phco3g02749 1064 SMART LRR_typ_2 554 577 IPR003591 -
Phco3g02749 1064 SUPERFAMILY RNI-like 76 385 - -
Phco3g02749 1064 ProSiteProfiles Protein kinase domain profile. 772 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02749 1064 Gene3D Transferase(Phosphotransferase) domain 1 853 1049 - -
Phco3g02749 1064 Gene3D Ribonuclease Inhibitor 386 694 IPR032675 -
Phco3g02749 1064 Gene3D Ribonuclease Inhibitor 187 283 IPR032675 -
Phco3g02749 1064 Gene3D Ribonuclease Inhibitor 29 186 IPR032675 -
Phco3g02749 1064 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 386 697 - -
Phco3g02749 1064 FunFam MDIS1-interacting receptor like kinase 2 isoform A 188 284 - -
Phco3g02749 1064 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Phco3g02749 1064 FunFam Leucine-rich receptor-like protein kinase family protein 285 381 - -
Phco3g02749 1064 SUPERFAMILY Protein kinase-like (PK-like) 755 1042 IPR011009 -
Phco3g02749 1064 PANTHER LEUCINE RICH REPEAT KINASE 2 335 1048 - -
Phco3g02749 1064 ProSitePatterns Tyrosine protein kinases specific active-site signature. 898 910 IPR008266 GO:0004672|GO:0006468
Phco3g02749 1064 Gene3D Ribonuclease Inhibitor 284 385 IPR032675 -
Phco3g02749 1064 Pfam Protein kinase domain 774 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02749 1064 SUPERFAMILY RNI-like 343 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02749 Phco-Chr3 53886347 53889779 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g02749 Pkinase 4e-44 CL0016