Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02715 ATGGTAGAGGGTAGCCAAATTTTGAGTGCTCATATTATTGTTAGTTTCTTTCTGCTGGTTCTCTGTGGCATGGTCTGTGGGACTGATAGTGATATATCCTGCTTGAAAAGTGTAAAGGAGGCACTGCAGGACCCTTACAATTATTTGCAATCCTGGGATTTCAAGAACAAAACAGAAGGGTATATATGCAAGTTCACTGGGGTTGAGTGTTGGCACCCTGATGAGAATAAGGTCTTGAATCTGAAACTGTCGAACATGGGACTCAAGGGTGAGTTTCCTCGCGGCGTTAAAAATTGCTCAAGCATGACAGGATTAGATTTTTCACTTAACAGACTCTCTAAAACCATTCCAGCCGATATATCCACACTTCTTACATTTGTGACATCTATTGATCTATCCTCAAATGATTTTACTGGGGAAATTCCTGCTTCCCTCTCAAACTGTACCTATCTTAATACTCTTAGACTTGACGAAAACCAACTCTCTGGTCAAATTCCTGCAAACTTGAGCCAGCTCCCGCGGCTTAAGACGTTTAGTGTTTCCAATAATCTTTTGACAGGGCAGGTTCCATCCTTTAAAACAGGTGTGGCTGATGCAGCAAGTTATGCAAACAATTCTGGTCTGTGTGGTGCTCCCTTGGATCGTTGCCAGGCCAAGAGTCCAGCGAGTAACACTGCTGTTATAGCTGGAGCAGCTGTTGGTGGTGTGACTGTTGCAGCATTAGGTTTGGGCATTGGAATGTTCTTCTACGTGCGCCGTATTTCTTATAGGAAAAAGGAAGAGGACCCGGAAGGAAACAAGTGGGCAAGAAGTCTAAAGGGAACCAAAACAATAAAGGTTTCTATGTTTGAGAAGGCAATTTCAAAAATGAACTTGAATGATCTCATGAAGGCAACTAATAACTTCAGTAAAAGCAATATTATTGGGTCTGGAAGATCAGGAACTGTTTACAAAGCCGTCCTTCCTGATGGCACATCACTCATGGTTAAGAGATTGCAGGAATCTCAACACTCAGAGAAAGAATTCATGTCTGAGATGGCTATACTAGGGACTGTCAAACATGGTAACCTGGTTCCTCTTTTAGGTTTTTGTCTGGCAAAAAGGGAGAGGCTTTTGGTCTATAAAAATATGCCAAATGGTACCCTCCATGATCAACTGCATCCTGATGAAGGCGTGTGCACCATGGATTGGGCTCTAAGGCTCAAAATTGCAATTGGGGCAGCCAAAGGGTTAGCATGGCTCCATCATAGCTGCAATCCCCGTATTATCCATCGAAACATAAGCTCTAAGTGCATCTTGTTGGACACTGATTTTGAGCCCAGAATTTGTGATTTTGGTCTTGCTAGATTGATGAACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTGGGTTATGTTGCTCCTGAATATGCAAAAACTTTGGTGGCTACTCCTAAAGGGGATATTTATAGCTTCGGGGTCGTGCTTCTTGAGTTGGTGACAGGTGAAAGAGCAACTCATGTGGCTAAAGCTCCAGAAACTTTTAAAGGAAATTTGGTTGAATGGATTTCACAGCAATCTAGCAATGCAAAACTCCATGATGTCATTGATGAATCATTAGTTGGGAATGGAGTAGACCAGGAGCTTTTCCAATTTCTGAAGGTTGCATGCAATTGTGTTTTGGAAATGCCAAAGGAGAGGCCTACCATGTTTGAAGTATACCAGCTTCTAAGAGCCATTGGCATGAATTATAATTTCACAGTTGAGGATGAGATAATGCTGCCTGTAGACTCTGGAGACGCTGATAACTTAGAAGAACTTATTGTAGCTCGAGAGGGACATGATTGA 1845 0.4228 MVEGSQILSAHIIVSFFLLVLCGMVCGTDSDISCLKSVKEALQDPYNYLQSWDFKNKTEGYICKFTGVECWHPDENKVLNLKLSNMGLKGEFPRGVKNCSSMTGLDFSLNRLSKTIPADISTLLTFVTSIDLSSNDFTGEIPASLSNCTYLNTLRLDENQLSGQIPANLSQLPRLKTFSVSNNLLTGQVPSFKTGVADAASYANNSGLCGAPLDRCQAKSPASNTAVIAGAAVGGVTVAALGLGIGMFFYVRRISYRKKEEDPEGNKWARSLKGTKTIKVSMFEKAISKMNLNDLMKATNNFSKSNIIGSGRSGTVYKAVLPDGTSLMVKRLQESQHSEKEFMSEMAILGTVKHGNLVPLLGFCLAKRERLLVYKNMPNGTLHDQLHPDEGVCTMDWALRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDTDFEPRICDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYAKTLVATPKGDIYSFGVVLLELVTGERATHVAKAPETFKGNLVEWISQQSSNAKLHDVIDESLVGNGVDQELFQFLKVACNCVLEMPKERPTMFEVYQLLRAIGMNYNFTVEDEIMLPVDSGDADNLEELIVAREGHD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02715 614 Gene3D Transferase(Phosphotransferase) domain 1 377 592 - -
Phco3g02715 614 ProSiteProfiles Protein kinase domain profile. 302 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02715 614 SUPERFAMILY L domain-like 29 192 - -
Phco3g02715 614 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 263 376 - -
Phco3g02715 614 FunFam Leucine-rich repeat receptor-like protein kinase 28 191 - -
Phco3g02715 614 CDD STKc_IRAK 308 576 - -
Phco3g02715 614 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Phco3g02715 614 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 77 578 - -
Phco3g02715 614 FunFam Leucine-rich repeat receptor-like protein kinase 377 586 - -
Phco3g02715 614 Gene3D Phosphorylase Kinase; domain 1 263 375 - -
Phco3g02715 614 Pfam Protein tyrosine and serine/threonine kinase 305 575 IPR001245 GO:0004672|GO:0006468
Phco3g02715 614 Gene3D Ribonuclease Inhibitor 28 218 IPR032675 -
Phco3g02715 614 SUPERFAMILY Protein kinase-like (PK-like) 279 577 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02715 Phco-Chr3 53655054 53657159 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Phco3g02715 PK_Tyr_Ser-Thr 5.6e-37 CL0016