Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02712 ATGCAAATTTCCTATAGAAGTTGCAAGTGCTACTCTCTATCAGCTTCACACAACCAACCACAAGGAGTTCTCATATCCATAAAACATATGGAGAATTCATTGGACAATTGGATTTCCAATTTGTTGTCACAGGAAATGGAAGACTATGATGCTGTGTTGAGTGAGAGCAATGGTTCATTTGATGAACAACAGTTCCTGAGAGAGATCCTTGAGGAGCCACAAAATTTGTCACCTCAAGGAGAGAATCTCAGTCCCACCAACAGCAGTGTGTCCTTTGATGAGGCAATTGGTGGCACTTTCCACAAAAGCTACAGTTCCAACTCCATCAAGTCCTTGAAAACACTGCCACCATCATCACATGCCTCTCCAGCCACCACCACATACCTTCTCTCTTTTGATACTTCAACTGCTGAACCAATCATACCTCATAAGCTTTCCCCAAAGCTCGGTTCATCACTGCAGGGATCTTCCAGCAAAAGGGGTGATGTGGTGAAAGATGGACCTGATGAGTTTGAACCATTCATGGCTCAGCCAAGAAAGAGGGTCAGAAGGCCCTGCGAGACACAACATCACATCATTGCAGAGAGGAAAAGGAGACAGGAAGTGACAGGGAGCATCATAGCACTTTCAGCAACCATTCCTGGACTCAAGAGGATGGACAAGGCTTATGTTCTTCGTGAAGCTGTGAATTACACAAGACAACTTCAAGAGAGAGTAAAAGAGTTGGAAAATCAAAACAATGACACAAGAGTTGTACATCATTCATCAACATTGGTAAGGAAATCTCAAGCCTCCTCAAATAAAAACAGCAGCAATACTAGTGAAACCAACAACGAATCACTGTTTGAGGTTGAAGCAAGAGTTCTAGATGAGGAAGTACTCATTAGAATCCATTGTGAGAAGCAAAAGGACATAATCTGCAACATACTTGTCTTGCTTGAAAAGCTCCATCTGTCCCCAACCAGTAGCAGCGTGTTACCATTTGGCACTTCTACTCTTATTATCCACATCATTGCTCAGATGGATGAGGAATGCAGAATGAGCACGGATGAGCTAGTGAAGAATCTGAGAGAATATCTTTTGGATGTGTATGACATGCAACAGTGA 1107 0.4282 MQISYRSCKCYSLSASHNQPQGVLISIKHMENSLDNWISNLLSQEMEDYDAVLSESNGSFDEQQFLREILEEPQNLSPQGENLSPTNSSVSFDEAIGGTFHKSYSSNSIKSLKTLPPSSHASPATTTYLLSFDTSTAEPIIPHKLSPKLGSSLQGSSSKRGDVVKDGPDEFEPFMAQPRKRVRRPCETQHHIIAERKRRQEVTGSIIALSATIPGLKRMDKAYVLREAVNYTRQLQERVKELENQNNDTRVVHHSSTLVRKSQASSNKNSSNTSETNNESLFEVEARVLDEEVLIRIHCEKQKDIICNILVLLEKLHLSPTSSSVLPFGTSTLIIHIIAQMDEECRMSTDELVKNLREYLLDVYDMQQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02712 368 PANTHER BHLH TRANSCRIPTION FACTOR 30 360 - -
Phco3g02712 368 Coils Coil 225 252 - -
Phco3g02712 368 MobiDBLite consensus disorder prediction 141 169 - -
Phco3g02712 368 MobiDBLite consensus disorder prediction 241 279 - -
Phco3g02712 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Phco3g02712 368 Gene3D - 185 261 IPR036638 GO:0046983
Phco3g02712 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 254 IPR036638 GO:0046983
Phco3g02712 368 MobiDBLite consensus disorder prediction 249 279 - -
Phco3g02712 368 SMART finulus 192 241 IPR011598 GO:0046983
Phco3g02712 368 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02712 Phco-Chr3 53628461 53630866 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g02712 HLH 9.9e-07 No_clan