Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02676 ATGGAACACGATGATCTAAACAACAATCACGACAAGAATTGTAATGAAGAAAGCTTTGTGTCAGAATCAAATGGTGCAAAAAGAAGCATTGCTGAGAGGAGGGGTTTCAATTCCAATGCGGCAAAAATCAACACAGCACTGTTTCGGACTGCAACTTCAACAACCCCTTCTCCTTCCCCTGCTGCTCGATCACCTCGTCTCACCATTCCCCCTGGCATCAGCCCCACTGCATTGCTTGGCTCTCCCATCATGCTTCCAAATTCTCAGGCAGTGCCATCATCCCCCACCACGGGCAGTTTCTTCATGATGCCACCTCTACCTCAGGAAACTAATCCATTGCTTCCTCCCTATTCTGCCCCTCTGAATCAGGTTTCTAGTAATTTCCACTCGATAAAGGGAGGAAATAGAGAAAGCCAACCACTTGCTCAAGTTCAGTCACCATTAGATTTTTCATTCCCAGCAGATTTTTCTAAAGGCCATTCTGTGAAAAATAGTGAAGTGAATTCGTACAATGATATTGAAATGGTAAATGATGCAATTGTTAATGCCAATAATGTTGAGATGCCAATGTCCGGCTCTGAAGAAGCAAGTGACGAAAGTGCTGTGCCGAAAAATGGTATCAATGGTGAGGATATTGGAGGGAAACCTGCTCCAGAAGGAGAACTGAAAGAAGCATCTCATGCAACAGGCATGGTGAGGACCTCAGAGGATGGTTATAATTGGAGAAAATATGGACAAAAACAGGTAAAAGGTAGTGAGTATCCCAGAAGCTATTATAAATGCACACAACCTAATTGTCAGGTCAAGAAAAAGGTGGAACGATCCCATGATGGTCAAATTACAGAAATTATTTACAAGGGTAATCATAACCATGTAAAACCACACTCTAGTCATAGAGGATCTGCACTTTCTACTGATGAGGTTTCAGACATGGCTGAAGAAGGTGCATTAGCTAAAGTTGATGGTGGGTTCATGTGGAGAAATATTCATTCAGGACTAAAAGATTCAAAAAGCAGTTTAGATTGGAAGGCTGATGGTCAGGAAAGGACATCATCAACTTCTGTTGTGACTGAGATTTCAGATCCTATATCAACCAACAAAGCTAAATCTCTATCTATGTTTGAATCGGAGGAGACCCCAGAGCTTTCTTCTACACTTGCTAGTCATGACATGGAAGAAGATGGAACCACTCAAGCACTTGCGTTGGTTGAAGATGAAGCTGAGAATCATGAATCGGAACCTAAAAGAAGGAAGAAAGAGAGCTATGCAGTTGAATCAAATTTGCCCCCTAGGTCTGTTCGTGAGCCAAGAGTGGTAGTCCAAATAGAGAGTGATGTGGACATTCTTGATGATGGTTATCGCTGGCGTAAGTATGGACAGAAGGTTGTCAAAGGAAATCCGAATCCTAGGAGCTACTATAAATGCACAAGTGCCGGATGTATGGTTAGGAAACATGTGGAAAGGGCCTCACACAATCTAAAATTTGTCCTTACAACTTATGAGGGAAAGCACAATCATGAAGTGCCCACAGCAAGAACCAACAATCAGATAAACTCAAGTGATGGTGGTTTGCCCCCCAATGGTGTCAATGGGCAAGTGGCTCTTGCTTTACCCGGGAATGCTGGCATTAAGCCTGAGACTCATCAAACTCTTGCACATCATTTTGATAGAAAACCTGAATTCAGCAATGAGTTTCTCAGGCCTAGTTTGATTGGAAGTTTCGGCAATGACATGAAGTTTGGTCCTTCTTCCCTTTGTCAAATGAAGTATCCTTCCTTGAATAACACCATGCCTTATGGCTATGGACTGAACCCTGATCGTTGTGCTGCCCCTCAAGCTGGATCCATTGCCTCAATGTTCCCTGATTTTCCAATGCCACTACCATTGAATCTTCCCTCATCTGGAAAATTTTCAATTTCTGGACTTAACTTTAACTGTGCCAAACCAATAAATCCTATCCAATCTTTCCTTTCTGGGCAGCAAGTGAAGGACATTGATACAGTATTTCTGAGGCCTAAGCAGGAACAGAAGGATGATACTATATATGGTTCGTGCATTCCCTCACTAGATGCAAATGCTTCACTCACTTCTTCTTCAGCAGCACCATCCATTTATCAACGAGTCATGCAAAATTTCCCTTCATAA 2145 0.4256 MEHDDLNNNHDKNCNEESFVSESNGAKRSIAERRGFNSNAAKINTALFRTATSTTPSPSPAARSPRLTIPPGISPTALLGSPIMLPNSQAVPSSPTTGSFFMMPPLPQETNPLLPPYSAPLNQVSSNFHSIKGGNRESQPLAQVQSPLDFSFPADFSKGHSVKNSEVNSYNDIEMVNDAIVNANNVEMPMSGSEEASDESAVPKNGINGEDIGGKPAPEGELKEASHATGMVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGNHNHVKPHSSHRGSALSTDEVSDMAEEGALAKVDGGFMWRNIHSGLKDSKSSLDWKADGQERTSSTSVVTEISDPISTNKAKSLSMFESEETPELSSTLASHDMEEDGTTQALALVEDEAENHESEPKRRKKESYAVESNLPPRSVREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCMVRKHVERASHNLKFVLTTYEGKHNHEVPTARTNNQINSSDGGLPPNGVNGQVALALPGNAGIKPETHQTLAHHFDRKPEFSNEFLRPSLIGSFGNDMKFGPSSLCQMKYPSLNNTMPYGYGLNPDRCAAPQAGSIASMFPDFPMPLPLNLPSSGKFSISGLNFNCAKPINPIQSFLSGQQVKDIDTVFLRPKQEQKDDTIYGSCIPSLDANASLTSSSAAPSIYQRVMQNFPS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02676 714 ProSiteProfiles WRKY domain profile. 230 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 165 530 IPR044810 GO:0003700
Phco3g02676 714 FunFam WRKY transcription factor 57 435 509 - -
Phco3g02676 714 MobiDBLite consensus disorder prediction 1 17 - -
Phco3g02676 714 Gene3D WRKY domain 223 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 MobiDBLite consensus disorder prediction 345 392 - -
Phco3g02676 714 Pfam WRKY DNA -binding domain 236 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 Pfam WRKY DNA -binding domain 450 507 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 FunFam WRKY transcription factor 224 295 - -
Phco3g02676 714 Gene3D WRKY domain 436 502 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 SUPERFAMILY WRKY DNA-binding domain 233 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 SUPERFAMILY WRKY DNA-binding domain 442 509 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 MobiDBLite consensus disorder prediction 1 33 - -
Phco3g02676 714 MobiDBLite consensus disorder prediction 190 227 - -
Phco3g02676 714 ProSiteProfiles WRKY domain profile. 444 509 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 MobiDBLite consensus disorder prediction 49 74 - -
Phco3g02676 714 MobiDBLite consensus disorder prediction 336 430 - -
Phco3g02676 714 SMART WRKY_cls 235 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 SMART WRKY_cls 449 508 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02676 714 MobiDBLite consensus disorder prediction 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02676 Phco-Chr3 53293962 53297590 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g02676 WRKY 3.7e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02676 3 53293962 53297590 Phco3g02676 3 53293962 53297590 ECH