Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02626 ATGGCCGAAGATTGGGATCTACATGCGGTGGTCAGAGGTTGCTCCACCATCACATCATCCTCCGTGTCTTCTTCTACCTCCTCCTCCTCTGGTTTTGCCTCTTGTTACTTCCACCCTGAAGGTGTTTCCTCCTCGTCTTCTTCTTCTTCTGGCTTCTCTATCTTTAGAGGCGAACAAGGAAGCCAAGTTTTGTCGCTTTCTGCGTACCCCTTTGAGGTAAGGAGCCCCATTGAAGAGCTGCATGAGCTTTGCAGGCCTTTCTTCTCCAAAGCTCAGCCTCTCTCGTTGCAAGCCTCTTCCCCCTTGTCCTCACTCTCTTCTTATTCCTCTGCGCCTCCCAAAACGCTTTCACCTCAAGAGAAGCAACAACAACAGCGGAACAAGCAGCCACACTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCGTTTGAAAATCTCTCCTCAGATATATGGGCATGGAGAAAATATGGCCAGAAACCCATAAAGGGGTCTCCTTATCCAAGGGGGTACTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTTGAGAGGAACAGATCAGACCCAACAATGTTCATAGTGACTTACACAGCTGAGCACAACCATCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAGCCATTGGCACCCCAGACTGCCACCACTGAACAAGACTCTGATAAGAGCAAGAGCCTAACAAAACCCTCTTCCCCTGCCACCTCAAGGACAGAGGAAGAGGTTCCAGCACAAGGGGAAAAGTCTGAGAGCAGAGAAGAGAAAGATGATGTGATGGATGATGAGGAAGAAGATGAATTTGTTTTGTCTGACATGGTGCTAACAGATGATTTCTTTGAGAGCTTGGATGAGCTGAGTCAACTCACTGCCCCTTCTGTTGTCACAGGAGACTGCTTCAGTGACCCCTTTTCAGCTATTGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTGGTGGATGCATATGA 1041 0.4909 MAEDWDLHAVVRGCSTITSSSVSSSTSSSSGFASCYFHPEGVSSSSSSSSGFSIFRGEQGSQVLSLSAYPFEVRSPIEELHELCRPFFSKAQPLSLQASSPLSSLSSYSSAPPKTLSPQEKQQQQRNKQPHSVTTPRSKRRKNQLKKVCQVPFENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTEQDSDKSKSLTKPSSPATSRTEEEVPAQGEKSESREEKDDVMDDEEEDEFVLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSAIAIPSWVASGAATAGGCI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02626 346 MobiDBLite consensus disorder prediction 104 132 - -
Phco3g02626 346 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02626 346 MobiDBLite consensus disorder prediction 264 278 - -
Phco3g02626 346 MobiDBLite consensus disorder prediction 215 262 - -
Phco3g02626 346 FunFam WRKY transcription factor 22 141 211 - -
Phco3g02626 346 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02626 346 MobiDBLite consensus disorder prediction 104 146 - -
Phco3g02626 346 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02626 346 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g02626 346 MobiDBLite consensus disorder prediction 212 287 - -
Phco3g02626 346 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g02626 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 311 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02626 Phco-Chr3 52920082 52921658 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g02626 WRKY 3.3e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02626 3 52920082 52921658 Phco6g02432 6 45737197 45738394 ECH
Phco3g02626 3 52920082 52921658 Phco3g02626 3 52920082 52921658 ECH
Phco4g00282 4 1800078 1800949 Phco3g02626 3 52920082 52921658 ECH
Phco1g00234 1 1658560 1665173 Phco3g02626 3 52920082 52921658 ECH