Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02619 ATGGTGTCCCTCAACTCAAACCCCCCTCAAACTTTTCCCTTCTTGGACCCCTTCAACATGGAGGATCCCAATAAGAAGGTTCGAAAACCTTACACCATTACCAAGTCAAGAGAGAACTGGACGGACCAAGAGCATGACAAGTTTCTCGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTGGGTTCAAAAACAGTTATCCAGATAAGGAGTCATGCACAGAAGTATTTCATGAAAGTTCAGAAGAATGGAACAAGTGAACATGTACCTCCCCCTCGTCCGAAAAGAAAAGCTGCTCATCCATACCCACAAAAGGCTTCTAAAAATGCTCTCACTATATCCAAAGTTACGAGGCCTTTGCAATCTTCATCTGCTTTGTCGGAATCATCATACATTTATAGGCCAGACTCATCATCTGTGCTTAGAACTGCAGTTAGCAGTGTGCCATTGTCATCTTGGGGTTATAATCTTACGCCACAAGTTGGTCTTCCTGAAGTGACAAAAGATCATATGGTGTTGAGTAAAAAAGTCAACCCCTTCAATTACTGCTACAGCAGTAGTAATGAGAGCACTCCTATGGGCTTGCCAAGTAGCAAACAGACAGATCAGGGTGACCAAGGCCAAACAATTAAAGCAATGCCAGCTTTTGCAGAAGTATATAGCTTCATCGGAAGTGTGTTTGATCCAAATGTGAGTAATCATTTACAAACACTGCAACAGATGGACCCAATAAATGTGAAAACCGTATTGCTGTTGATGAGAAACCTCTCCACCAATTTAAGGAGTCCTGAGTTTGAGAATGAAAGAAGGATGCTGTCATTGTACAATGCTAACTCGGACAGAACAAAATCATCTCAGCCATCTTTAACTGACAGATCAGAGAGTGTTATCCTATCTGCTTAA 918 0.4194 MVSLNSNPPQTFPFLDPFNMEDPNKKVRKPYTITKSRENWTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTISKVTRPLQSSSALSESSYIYRPDSSSVLRTAVSSVPLSSWGYNLTPQVGLPEVTKDHMVLSKKVNPFNYCYSSSNESTPMGLPSSKQTDQGDQGQTIKAMPAFAEVYSFIGSVFDPNVSNHLQTLQQMDPINVKTVLLLMRNLSTNLRSPEFENERRMLSLYNANSDRTKSSQPSLTDRSESVILSA 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02619 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Phco3g02619 305 CDD SANT 39 82 IPR001005 -
Phco3g02619 305 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Phco3g02619 305 MobiDBLite consensus disorder prediction 283 305 - -
Phco3g02619 305 MobiDBLite consensus disorder prediction 88 110 - -
Phco3g02619 305 Gene3D - 39 87 - -
Phco3g02619 305 FunFam protein REVEILLE 6 isoform X1 39 87 - -
Phco3g02619 305 PANTHER SWI/SNF COMPLEX-RELATED 20 274 - -
Phco3g02619 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Phco3g02619 305 SMART sant 36 84 IPR001005 -
Phco3g02619 305 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Phco3g02619 305 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02619 Phco-Chr3 52833640 52838801 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco3g02619 Myb_DNA-binding 4.3e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02619 3 52833640 52838801 Phco3g02619 3 52833640 52838801 ECH
Phco1g00722 1 6642331 6648684 Phco3g02619 3 52833640 52838801 ECH
Phco3g02619 3 52833640 52838801 Phco1g00722 1 6642331 6648684 PCT