Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02599 ATGATGGGTAACGGGGAGCCTTTGGATTTGTATAAACTTTTCATGGTGGTAAAGAAGAAAGGTGGTTATGATGCTGTCTGTAAGAATAGGTTGTGGGATTTGGTGGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCCTCTGTGGAACTTGTTTACAGCAAACACTTGAGTACTCTAGAGACATGTTTGAAGAATGTTGCTGGTGGCAAGTTTGCTGAATGTGGTTTAGAGGGTGATAGAGTTAAGTTTCACAAGCATTTGATGAAGGCACACACTGAATCCGTGTTGGACGAATCTTGTGAGGAGGAGGCGGGAGATAAACTTGAGAGGAGGGAGTGTGGCTGTCCAGATGGGAGGAAGTTCAGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGTGTCCAATGGGGTTGAACTCGAGAGTGCATATCTAGGTGGGAGTAAGTCATGTGGTAGTAATAGTATGAAAGACAAAAATTCAGATTCTATCGGGGATGAATTTGATAATGTATGTGACTATCTAGAGGAGAGGAAGTTGTGCGGTACAAATAGGGTGAACGGGGTGAATCCAGATTCCAATGCGGCCAAGAAAGTAAGGAGGTCAGGACCTCGACTTGTTGATTTGGACATGCTGGAGGACCATGAGACGGGTGAGCCTATTATAGTAAAATTTTGCGGATTTAATACTGAAATGGATATACTAGAAGAGTTTGATGAGAGCAAATTATTAACTGTGGATGCATCCGATGCAGAAAGTGACATGCTTAGATTGTCAGACGGAAGCAAGAGCAGCAATAAAGATAACGATGACGGTAGTGATGAAGTCTTGATATTGGATCCATCTAGTGTTGACAAAGAGAAATTTGGTCACAAGAGGAAGAGAGAATCTATGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCGATTCCTGAGAAGTCTAAGTGGAAGTCTTGCAGTAGTCAGGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCAGTCTTTCTGAAGAAAGATTTTGAGACAGTCAGCGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTTCATGTACGATGATCGCATTGGGGCTTTGTACAATTTTAGACAGAGGTTGAAATGTGATGAGAGGTCTTTATTGGGAAAATCTACATCTGATGGAGTCTCCTCTTCTTCGTCTAGAACAAGAACACGCGGAGGTTTGGAGAGAACCTCGAGTGCTCGAGCTGAAGATCGGGTGGACAAAAAGTTACTCGAATGTACTGCACTCTCGAGTCTTGATAAATGTGCCCGAGTGCACATCCCTGTTGGGCCAAATCATCAAGCTGAAGTGCCAAAGTGGACTGGCATGACTTGTGAGAGTGATTCTAAGTGGTTGGGGACAGAAATATGGCCTCCAAAATTTGTAAATTCGGAATGGTGTATTGTTGAAAGGGACCCGATTGGAAAAGGAAGGCAAGATTCATGTGGGTGCCCAGTACAAGGTTCTGTTGAGTGTGTCCGGTTTCACGTTGCTGAGAAAAGGTCTAAAGTTAAGATGGAACTTGGTGAGGCTTTTTTCCAATGGAATTTAGACAAGGTAGGTGAAGAAGTTAGGAGTTCTTGGACAGATCAAGATGAGAAGAAGTTCAAGGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCAGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAATAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAATTCACACCATTGAGGAAAGTGTTTGGACATCATACACCAAAATCACGCAGCCTCACCTTGTTATCACCCAAAAAATCCACAGGCAAAAGGGAAAATAGCAAGTGA 1959 0.4242 MMGNGEPLDLYKLFMVVKKKGGYDAVCKNRLWDLVGEEYGLGVKVGSSVELVYSKHLSTLETCLKNVAGGKFAECGLEGDRVKFHKHLMKAHTESVLDESCEEEAGDKLERRECGCPDGRKFSGSNRVKCVKPVSNGVELESAYLGGSKSCGSNSMKDKNSDSIGDEFDNVCDYLEERKLCGTNRVNGVNPDSNAAKKVRRSGPRLVDLDMLEDHETGEPIIVKFCGFNTEMDILEEFDESKLLTVDASDAESDMLRLSDGSKSSNKDNDDGSDEVLILDPSSVDKEKFGHKRKRESMSEMLIWINSIAKNPCDPAVGSIPEKSKWKSCSSQEIWKQALLFREAVFLKKDFETVSEQLSWQSQKMHPFMYDDRIGALYNFRQRLKCDERSLLGKSTSDGVSSSSSRTRTRGGLERTSSARAEDRVDKKLLECTALSSLDKCARVHIPVGPNHQAEVPKWTGMTCESDSKWLGTEIWPPKFVNSEWCIVERDPIGKGRQDSCGCPVQGSVECVRFHVAEKRSKVKMELGEAFFQWNLDKVGEEVRSSWTDQDEKKFKDVVKSNPASLDKCFWDHLFKTFPKKSREDLVSYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHHTPKSRSLTLLSPKKSTGKRENSK 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02599 652 SMART ELM2_2 446 498 IPR000949 -
Phco3g02599 652 MobiDBLite consensus disorder prediction 394 412 - -
Phco3g02599 652 SMART bright_3 2 66 IPR001606 GO:0003677
Phco3g02599 652 CDD ARID 4 61 - -
Phco3g02599 652 MobiDBLite consensus disorder prediction 605 652 - -
Phco3g02599 652 CDD SANT 546 594 IPR001005 -
Phco3g02599 652 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Phco3g02599 652 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Phco3g02599 652 MobiDBLite consensus disorder prediction 606 625 - -
Phco3g02599 652 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 645 - -
Phco3g02599 652 MobiDBLite consensus disorder prediction 394 420 - -
Phco3g02599 652 Gene3D - 1 71 IPR036431 GO:0003677
Phco3g02599 652 SUPERFAMILY ARID-like 4 71 IPR036431 GO:0003677
Phco3g02599 652 MobiDBLite consensus disorder prediction 257 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02599 Phco-Chr3 52607652 52611134 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco3g02599 ARID 9.6e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02599 3 52607652 52611134 Phco3g02599 3 52607652 52611134 ECH
Phco3g02599 3 52607652 52611134 Phco1g00760 1 6982724 6986052 PCT