Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02546 ATGGCAACTGATATGCAGAGGCTTGTGGGAACGAGTGAAGATGATGAAGAAATGGGAATGGATGTGAAAGATGAGGATGATGAAGATGATGATTACGAGGAAAATGGTGGCGAGCAGGGAAATGCTTCAGGGATGGTGGGGCTTGATGGTGGGAATGAGATGGGAACTGCCACTGGTGACAACAGGTTTCCGCAGCACCAGCAGTTTCATGAACAAGTAGGCACCCCCGGTGGAGGTACTCGAAGATCTAGGCCGGTAGAGGAGAAAGAGAGAACAAAGCTAAGGGAGAGGCGCCGGAGGGCCATCACTGCAAGGATCTTGGCGGGGCTTCGCAGGCATGGAAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAGGCTGGATGGGTGGTTCTTCCAGATGGTACTACTTTTCCCTCAAGATCTCAGGGTCAAAAGCCAGCTGGTGGTAATTCTACCATTGTAACTTCATCATCTTCCCATGTGGCTTCACAACAAACTCCATCCCCTTCTCTGAGGGGAGTTGCTTCTGGCTATAGGAGCCCTTTAGAGTTTAGTGCATCGAAAGGTGTTTTTATGCCAACTCCATCTCCTTATAATGTATCCTCAACTTCCCGATCTCAAACATCTATTGTGGGGGATGGAGAAGCACAAAGAGACAACCGTCCTCTGATTGGTGGTTCAATGGATAATGCTGATGAGAAGCAGATTGCGGACTTGCCCCCCAGATTACCCGAGCGTGATTTGGCTGGTACCCCGTATGTTCCAGTTTATGTGATGCTGCCGTTAGGGGTGATCAATATAAAATGTGAGCTTGTTGATCCTGATGGTCTGCTAAAACAGCTGAGGGTGTTGAAATCAGTACATGTTGATGGTGTTATGGTAGATTGTTGGTGGGGAATAGTGGAAGCCCATGCTCCACAAGAGTATATTTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAAGTTAAGCTTAAGCTGCAGGTTGTTATGTCATTTCATGAATGTGGAGGGAATTTTGGTGATGATGTTTGTATTCCATTGCCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGACACAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGAGTTTTAAGAGGTCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTAATCTCCACGGTTGAAGTTGGACTGGGTCCATGTGGAGAGCTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGTTATGATCAGTATATGTTGAAAAGTCTTAGGAAAGCAGCAGAAGCAAGAGGGCACCCTATTTGGGCTAGAGGACCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGTGTTACTGCAAAGTTATCAGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCTGCTGAATTAACTGCTGGGTACTATAACCCATGCAATCGTGATGGCTATGCTGCAATTTTGACAATGTTAAAGATAAATGGAGTTAGCTTAAACATTCCTTGTGTTGAGTTGCACTCATTAAACCAACACGAGGGCTTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCCGGTTGGGATGTTGACTTACCAGTTACCAGTCAAAATGGGTTTCCTTGCCTAAACAGAGTTTGTTATAACAAGGTTTTGGATCATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCCTTTACTTACCTGAGGCTTAGTCCAGTTCTTATGGAACGACAAAACTTCATAGAGTTCGAACGATTTGTCAAAAGGATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA 2103 0.4465 MATDMQRLVGTSEDDEEMGMDVKDEDDEDDDYEENGGEQGNASGMVGLDGGNEMGTATGDNRFPQHQQFHEQVGTPGGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQKPAGGNSTIVTSSSSHVASQQTPSPSLRGVASGYRSPLEFSASKGVFMPTPSPYNVSSTSRSQTSIVGDGEAQRDNRPLIGGSMDNADEKQIADLPPRLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSVHVDGVMVDCWWGIVEAHAPQEYIWNGYKRLFQMVREVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISTVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHPIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCVTAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAILTMLKINGVSLNIPCVELHSLNQHEGFPETFADPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVCYNKVLDHAKPMNDPDGRHFSSFTYLRLSPVLMERQNFIEFERFVKRMHGEAVLDLQV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02546 700 MobiDBLite consensus disorder prediction 17 36 - -
Phco3g02546 700 MobiDBLite consensus disorder prediction 144 182 - -
Phco3g02546 700 MobiDBLite consensus disorder prediction 58 74 - -
Phco3g02546 700 MobiDBLite consensus disorder prediction 144 184 - -
Phco3g02546 700 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 217 693 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 Pfam Glycosyl hydrolase family 14 266 685 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 Gene3D Glycosidases 254 699 - -
Phco3g02546 700 MobiDBLite consensus disorder prediction 1 95 - -
Phco3g02546 700 MobiDBLite consensus disorder prediction 204 223 - -
Phco3g02546 700 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 213 IPR008540 -
Phco3g02546 700 SUPERFAMILY (Trans)glycosidases 259 696 IPR017853 -
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 506 525 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 318 336 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 433 455 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 297 311 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 575 598 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 340 361 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 615 637 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 557 568 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 540 556 IPR001554 GO:0000272|GO:0016161
Phco3g02546 700 MobiDBLite consensus disorder prediction 204 238 - -
Phco3g02546 700 PRINTS Plant beta-amylase signature 666 680 IPR001371 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Plant beta-amylase signature 681 695 IPR001371 GO:0000272|GO:0016161
Phco3g02546 700 PRINTS Plant beta-amylase signature 423 432 IPR001371 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02546 Phco-Chr3 52089952 52095042 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Phco3g02546 Glyco_hydro_14 7.2e-100 CL0058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02546 3 52089952 52095042 Phco3g02546 3 52089952 52095042 ECH