Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02531 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAGGGACCTTGGACAGCTGAAGAGGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAACTACCTCAGACCTGACATCAAGCGTGGTCCCTTTACTCAAGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCCTCTCAATTACCAGGAAGAACAGACAATGAGATAAAGAACTTGTGGAACACCCACTTGAAGAAGCGTCTTAAAAGCATGGGACTTGACCCTAGAACCCACGAGCCATTGGCCTCATCTCCCTCTTACCCCTTCCACAAGGCACATGCATCTGTTTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGGCTCTCAAATGAGTCAACAAGGTTCAGCCAGAACACCACCAATCCTAATTCAGATGCCAAAACCACTGACTCTGACTACTTTCTCCGCATTTGGAACTCTGAGGTTGGAGAGGCATTTCGCAATGTTGTTGTTCAACACAAAGCTGATGACAACAAAATCACCACTACAAGCTCCTGCCCCAGTCCCCTCTCTGCAGGGTCATCTTCCAACAAATGTGAGTCAATTGCAACAAATGCCGATTTGGCTTCTATTGCACAAGAAACTACGCCCTCTAACATTGTGAAACAAGAGCTGGAGTGGAGGACTCGTGGATCTGATTCTTCAAGCTCTAATGACATGGAGGATTCATCAGACACTGCTTTGCAGCTCCTGTTAGATTTTCCTATAAACAATGATATGAGCTTCTTAGAAGGAAACTCTTTTATGTGTCCACTTTAG 927 0.4628 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTQEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPRTHEPLASSPSYPFHKAHASVSTRHMAQWESARLEAEARLSNESTRFSQNTTNPNSDAKTTDSDYFLRIWNSEVGEAFRNVVVQHKADDNKITTTSSCPSPLSAGSSSNKCESIATNADLASIAQETTPSNIVKQELEWRTRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCPL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02531 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phco3g02531 308 MobiDBLite consensus disorder prediction 164 184 - -
Phco3g02531 308 Gene3D - 70 133 - -
Phco3g02531 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Phco3g02531 308 FunFam MYB transcription factor 70 117 - -
Phco3g02531 308 MobiDBLite consensus disorder prediction 165 184 - -
Phco3g02531 308 SMART sant 67 115 IPR001005 -
Phco3g02531 308 SMART sant 13 64 IPR001005 -
Phco3g02531 308 CDD SANT 16 62 IPR001005 -
Phco3g02531 308 FunFam Myb transcription factor 11 68 - -
Phco3g02531 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phco3g02531 308 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Phco3g02531 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco3g02531 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco3g02531 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Phco3g02531 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Phco3g02531 308 CDD SANT 70 113 IPR001005 -
Phco3g02531 308 Gene3D - 11 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02531 Phco-Chr3 51978931 51981264 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g02531 Myb_DNA-binding 1.6e-13 CL0123