Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02477 ATGAGTTTTGGGGGGTTTCTTGAGGCCAAACAAAGTGGTGGAGGCGGTAGGATCGTATCAGATATTCCTTACAGCAACGGTTCCAACCACAGCAACGATATAATGCCCTCTGGTGCAATCTCGCAGCCTCGTTTAGCCACTCCTACTTTGGCCAAATCCATGTTCAACTCTCCTGGCCTTTCTCTTGCACTTCAAAGTGATGTCGATGGACAAGGGGATATGAACAGATTAATGCCCGAGAATTTTGAGCAAAATGGGTTGAGAAGGAGCCGGGAAGAGGAGCATGAAAGCAGATCTGGCAGTGATAACATGGACGGTGCTTCTGGTGATGATTTTGATGCCGCCGACAACCCTCCAAGAAAAAAACGCTATCACCGACACACTCCTCAGCAAATTCAAGAGCTTGAAGCGCTTTTCAAGGAGTGTCCTCATCCGGATGAGAAGCAAAGGCTTGAACTCAGCAGAAGGCTGAATTTGGAAACGAGGCAAGTAAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACACAATTGGAACGGCACGAGAACTCGCTGCTAAGGCAAGAGAATGACAAGCTTAGAGCGGAGAACATGTCTATGAGGGAAGCTATGAGAAATCCTATGTGCTCAAACTGTGGAGGTCCTGCAATGATTGGTGAGATTTCACTTGAAGAACAGCATCTCAGGATTGAGAATGCTAGATTGAAGGATGAACTAGACCGTGTTTGTGCACTCGCTGGCAAGTTTTTGGGTCGCCCCATTTCTTCTTTAACAAACTCAATTGGGCCTCCATTGCCAAACTCAAGCTTGGAGCTTGGGGTTGGGAGCAATGGTTTTGGAGGTTTGAGCACCGTGCCTTCAACATTGCCTGATTTTGGGGTGGGGATATCAAGCCCCTTAGCTATGATGTCACCTTCAACTAGACCAACAGCAACATCAACTGTGGTGACTCCTGGCCTTGACAGATCAGTGGAGAGGTCTATTGTTTTGGAACTTGCTTTGGCTGCAATGGATGAGTTGGTGAAGATGGCTCAGACCGGGGAGCCTCTTTGGATCAGGAGTTTGGAAGGGGGAAGAGAAATTCTCAACTATGAGGAGTACACAAGGACAATGACACCTTGCATTGGTTTGAGACCCAATGGTTTTGTCACCGAGGCCTCTAGACAAAATGGCATGGTCATCATAAACAGCTTGGCTCTTGTTGAAACATTAATGGACTCGAATCGATGGTCAGAGATGTTCCCTTGTATGATTGCTAGAACCTCCACCGCTGAAGTTATATCTAATGGAATAAATGGAACTAGAAATGGTGCTCTTCAGCTTATGCATGCGGAACTTCAAGTCCTTTCGCCCTTGGTTCCTGTTCGTGAGGTCAATTTTCTACGCTTTTGCAAGCAGCACGCAGAGGGCTTGTGGGCAGTGGTGGATGTGTCCATAGACACCATCCGAGAAACTTCTGGTCCACCCACTTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGCGTTGTGCAAGATATGCCAAATGGTTATTCTAAGGTGACATGGGTGGAACATGCAGAATACGACGAAAGCCAAGTTCACCAGCTGTACAGACCCTTGTTGAGCTCAGGCACGGGGTTTGGAGCACAACGTTGGGTTGCCACCCTTCAACGCCAATGCGAGTGCTTAGCCATTCTAATGTCCTCAGCAGTCCCCTCTAGAGAGCATTCAGCAATAAGCTCAGGTGGAAGGAGGAGCATGCTGAAGCTAGCACAACGCATGACGAACAATTTCTGTGCCGGTGTTTGTGCCTCCACGGTGCACAAGTGGAACAAGCTGAACGCGGGGAACGTGGGGGAGGACGTGAGGGTGATGACAAGGAAGAGCGTGGACGACCCAGGCGAGCCGCCGGGTATTGTCCTCAGCGCGGCCACCTCAGTGTGGCTGCCGGTGTCGGCGCAAAGACTCTTCGACTTCCTGCGCGACGAGCGGCTCCGGAGTGAGTGGGACATTCTCTCGAACGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAGGGACAAGACCATGCTAACTGTGTCTCCCTCCTCAGAGCCAGTGCTATGAATGCCAACCAGAGCAGCATGTTGATTTTGCAGGAGACGTGCACCGACGCGTCGGGCTCGCTTGTGGTGTACGCGCCGGTGGACATTCCCGCCATGCACGTGGTGATGAACGGCGGCGACTCTGCCTACGTGGCGCTTCTTCCGTCGGGGTTCGCCATCGTCCCAGATGGATCCGTGGCCGGCGGAGAACAGCACGGAGGCGCGTCGCAGAAGAGGGCGAGTGGATGTCTTCTGACGGTGGCGTTCCAGATTCTCGTGAACAGTCTCCCGACGGCGAAGCTGACGGTGGAGTCGGTGGAGACCGTGAACAACCTCATCTCGTGCACCGTGCAGAAGATCAAAGCAGCGCTTCACAGCGAGAGTTGA 2454 0.513 MSFGGFLEAKQSGGGGRIVSDIPYSNGSNHSNDIMPSGAISQPRLATPTLAKSMFNSPGLSLALQSDVDGQGDMNRLMPENFEQNGLRRSREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLNLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSMREAMRNPMCSNCGGPAMIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPISSLTNSIGPPLPNSSLELGVGSNGFGGLSTVPSTLPDFGVGISSPLAMMSPSTRPTATSTVVTPGLDRSVERSIVLELALAAMDELVKMAQTGEPLWIRSLEGGREILNYEEYTRTMTPCIGLRPNGFVTEASRQNGMVIINSLALVETLMDSNRWSEMFPCMIARTSTAEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGLWAVVDVSIDTIRETSGPPTFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSAVPSREHSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSAQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHANCVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGSVAGGEQHGGASQKRASGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHSES 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02477 817 FunFam Homeobox-leucine zipper protein GLABRA 2 332 555 - -
Phco3g02477 817 MobiDBLite consensus disorder prediction 85 101 - -
Phco3g02477 817 CDD homeodomain 120 178 IPR001356 GO:0003677
Phco3g02477 817 SMART START_1 332 556 IPR002913 GO:0008289
Phco3g02477 817 CDD START_ArGLABRA2_like 327 555 - -
Phco3g02477 817 SUPERFAMILY Bet v1-like 326 556 - -
Phco3g02477 817 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 117 814 IPR042160 -
Phco3g02477 817 Pfam START domain 332 556 IPR002913 GO:0008289
Phco3g02477 817 Pfam Homeodomain 121 176 IPR001356 GO:0003677
Phco3g02477 817 SMART HOX_1 119 182 IPR001356 GO:0003677
Phco3g02477 817 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Phco3g02477 817 FunFam Homeobox-leucine zipper protein HDG1 108 194 - -
Phco3g02477 817 Coils Coil 172 207 - -
Phco3g02477 817 Gene3D - 108 194 - -
Phco3g02477 817 SUPERFAMILY Homeodomain-like 104 178 IPR009057 -
Phco3g02477 817 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Phco3g02477 817 SUPERFAMILY Bet v1-like 584 810 - -
Phco3g02477 817 ProSiteProfiles START domain profile. 323 559 IPR002913 GO:0008289
Phco3g02477 817 MobiDBLite consensus disorder prediction 66 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02477 Phco-Chr3 51461995 51467193 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco3g02477 START 2.1e-55 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02477 3 51461995 51467193 Phco3g02477 3 51461995 51467193 ECH