Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02464 ATGGTGAGAGGAAAGACTCAGATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTTACCTTCTCCAAGCGGCGCAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTATCATTTTCTCTCCAAGAGGAAAACTTTACGAGTTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAACAGAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGACCTACTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGCTTGGGTTCATGCTCCTTAGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGATCAAATTGAGCAATTAAAAGAAAAGGAAAGAAGCCTATATGCTGAAAATATCAAGCTGTGTGAGCAGTATGGTATCCAGCAACAGCCAGGAACAAAGGATGTGAGAGAAAATCAACCCTATGAAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATTGGGCTACCTAGGTCTAGTTGA 630 0.4333 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTVNRSDEQNMQHLKQETANLMKKIDLLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKDQIEQLKEKERSLYAENIKLCEQYGIQQQPGTKDVRENQPYEESSPSSEVETELFIGLPRSS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02464 209 Coils Coil 121 163 - -
Phco3g02464 209 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Phco3g02464 209 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco3g02464 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco3g02464 209 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Phco3g02464 209 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Phco3g02464 209 MobiDBLite consensus disorder prediction 174 198 - -
Phco3g02464 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco3g02464 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco3g02464 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco3g02464 209 MobiDBLite consensus disorder prediction 174 209 - -
Phco3g02464 209 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco3g02464 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco3g02464 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco3g02464 209 FunFam MADS-box protein SOC1 14 95 - -
Phco3g02464 209 Coils Coil 73 107 - -
Phco3g02464 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Phco3g02464 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02464 Phco-Chr3 51315181 51329802 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco3g02464 K-box 1e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02464 3 51315181 51329802 Phco1g00897 1 8831555 8842172 PCT