Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02401 ATGCCTGCTCTGAGAATTCATGGATATGCCTTGGCTGTTTCGTTTTGTCTTATCACCTTCATAGCAGCATCACAACGAATGGACCCTTCAGAAGTTAATGCGCTGATAGACATCAAGAAAAGTTTGATTGATCCTGAGAACAATCTTAAGAACTGGAATAAAGGAGACCCATGTGCAAGAAACTGGACTGGGGTTTGGTGCTTTGATAAGAAGGGAGAAGATGGGTATTTCCATATTCGTGAGATCTACTTAATGACAATGAATCTTTCGGGAAGTCTATCACCTCAGCTTGGTCAGCTATCCCATCTTGAGATAATGGATTTCATGTGGAACAATCTGACAGGACCGATACCAAAGGAGATTGGAAATATTAAAACATTGAAACTCTTGCTCCTGAATGGCAATATGTTATCTGGGAGTTTACCAGACGAGCTTGGCAACCTTCCATTTATAAATAGATTCCAAGTAGACGAAAACCAATTGTCTGGTTCTATACCAGAGTCACTTGCCAACATGATTAGTGTTAAACACCTCCACCTGAACAACAACTCATTTAGTGGTCAACTTCCATCCACACTTTCAAAGCTATCAAATCTGATGCATTTGCTTGTGGACAACAATAACTTATCTGGCAATCTTCCACCAGAATACTCCATGTTAAATGGATTGGCAATACTCCAGCTTGATAACAACAACTTCAGCGGGAATGGAATTCCTTCTACCTATGCAAACTTAACCAGCCTGGTGAAATTAAGTCTAAGAAACTGCAGTCTGCAAGGAGCTGTTCCTGATTTCAGTTCAATATCCAATCTTGCCTATTTAGATCTTAGCTGGAATCAGTTCACTGGACCCTTACCGTCAAATAAACTAGCAGACAATATGAATACCATTGATCTGTCCAATAATCATCTCAACGGATCTATTCCTCGAAGCTACTCTTATCCTCATCTTCAAAAATTGTCACTTGCGAACAATTTACTGTGGGGGTCCATCCCTGCTAGCATATGGCAAAATATGTCCTTCAGTGTGAAGGATAAACTAATAATTGATCTCCATAACAACTCGTTTGAGGATGTTCTGGGAAATCTGAACCCCCCGGCAAATGTTACCTTGAGGCTTTCTGGTAATCCTATATGCAAGAATTCTAACACACAAAATGTTGGTCAATATTGTGGACCTGAAGGAGATAAGGCAGCCCAAGACTTAACAAACTCTACTGGCTGTCCTGTTCAATCTTGTCCAGCGGATGAATTTTATGAATACGCCCCTTCTTCCCCAGTTCCTTGCTTTTGTGCGGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTGCTCCCTATAGATCTAGATTTGAACACTACATAACTGACTCCTTAAAGTTACACCTCTACCAACTATCAGTAGATTCGGTTGCTTGGGAAAAGGGACCTCGTCTTAGAATGTATCTGAAACTCTTCCCTTCCTATAATGATTCCCGTTCTAATGTGTTCAACGTAAGTGAGGTCCTTCGCATTAGCAGCATATTCACATCATGGCGATTTTCTCGCACTGATTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTTGGACCTTATGAAGATTTAATTATTCATTCGGAGAAGGCAAAAGTTAGTGTTGGCATAAAAGTTGCTGTTGTAATAGCAGCTGCTGCTTGTGCTTTAGCAATATCTGCAATAATCATTCTCCTGATTACTAGAAGAAAGATGAAATACCAGAAGAAGATTTCCAGGAAACGTATGTCTACTAGTATATCTATCAAAATAGATGACATGAAAGCATTTACTTACAAAGAACTGGCTCTTGCTACTAACAAATTTAATATCTCGACTAGAGTTGGTCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATCTGATGAAAGCTTTGTGGCCGTTAAGCGAGCAGAAGCAGGTTCCTTACAAGGACAAAGGGAGTTCTTGACTGAGATTGAGCTTTTGTCAAGGTTACACCATCGAAATCTTGTCTCGCTGATTGGATACTGTAATGAAGAAGGGGAGCAGATACTGGTTTACGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAGAAGAAGAAAAACCAGGGGGAGCCTAAATTTTAGTATGAGGTTGAGAATTGCAATGGGAGCCGCCAAAGGCATACTGTATCTGCATACAGAGGCTAACCCTCCTATATTCCACAGAGATATTAAAGCCAGTAACATTCTTCTGGACTCCAAGTTCACAGCTAAAGTGGCTGATTTTGGACTGTCACGGCTTGTACCAGACTTAGATGAAGAAGGAACTGCTCCTAAATATGTGTCAACAGTTGTGAGAGGAACTCCAGGTTACCTGGACCCAGAATATTTGTTGACTCATAAGCTGACAGACAAATGTGATGTCTATAGCCTGGGAATTGTGTACCTAGAGCTTTTAACAGGCATGCAACCAATATCTCATGGGAAAAACATTGTCCGCGAGGTTAACATGGCTCTTCAATCTGGCACAGTATATTCCATCATAGACAGCACAATTGGGTTGTATACATCTGAATGCTTGGACAAATTCCTAACTCTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGAAAGACCATCAATGCTAGATGTGGTGAGGACACTGGAAGATATCATTGCAATGTTGCCCGAAGCTGAAACTATTTTCTCAGATGTTAGCTTAGACAGTTCTGGCAACATAGCACCACCCTCATCATCAACATCAACAACAGGATCTCATGTAATAAGGGAGGAGCAAAACATGTCCTCATATGTGTCAGGAAGCAATCTTGTCAGTGATGTCATTCCCACCATTGTTCCTCGCTGA 2877 0.4105 MPALRIHGYALAVSFCLITFIAASQRMDPSEVNALIDIKKSLIDPENNLKNWNKGDPCARNWTGVWCFDKKGEDGYFHIREIYLMTMNLSGSLSPQLGQLSHLEIMDFMWNNLTGPIPKEIGNIKTLKLLLLNGNMLSGSLPDELGNLPFINRFQVDENQLSGSIPESLANMISVKHLHLNNNSFSGQLPSTLSKLSNLMHLLVDNNNLSGNLPPEYSMLNGLAILQLDNNNFSGNGIPSTYANLTSLVKLSLRNCSLQGAVPDFSSISNLAYLDLSWNQFTGPLPSNKLADNMNTIDLSNNHLNGSIPRSYSYPHLQKLSLANNLLWGSIPASIWQNMSFSVKDKLIIDLHNNSFEDVLGNLNPPANVTLRLSGNPICKNSNTQNVGQYCGPEGDKAAQDLTNSTGCPVQSCPADEFYEYAPSSPVPCFCAAPLRIGYRLKSPSFSYFAPYRSRFEHYITDSLKLHLYQLSVDSVAWEKGPRLRMYLKLFPSYNDSRSNVFNVSEVLRISSIFTSWRFSRTDFFGPYELLNFTLLGPYEDLIIHSEKAKVSVGIKVAVVIAAAACALAISAIIILLITRRKMKYQKKISRKRMSTSISIKIDDMKAFTYKELALATNKFNISTRVGQGGYGNVYKGILSDESFVAVKRAEAGSLQGQREFLTEIELLSRLHHRNLVSLIGYCNEEGEQILVYEFMPNGTLRDWISGRRRKTRGSLNFSMRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPDLDEEGTAPKYVSTVVRGTPGYLDPEYLLTHKLTDKCDVYSLGIVYLELLTGMQPISHGKNIVREVNMALQSGTVYSIIDSTIGLYTSECLDKFLTLALSCCQDNPEERPSMLDVVRTLEDIIAMLPEAETIFSDVSLDSSGNIAPPSSSTSTTGSHVIREEQNMSSYVSGSNLVSDVIPTIVPR 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02401 958 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Phco3g02401 958 PANTHER RECEPTOR-LIKE PROTEIN 55 38 895 - -
Phco3g02401 958 Gene3D Ribonuclease Inhibitor 30 151 IPR032675 -
Phco3g02401 958 Gene3D Ribonuclease Inhibitor 152 220 IPR032675 -
Phco3g02401 958 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
Phco3g02401 958 ProSiteProfiles Protein kinase domain profile. 620 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02401 958 Pfam Protein kinase domain 621 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02401 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 743 755 IPR008271 GO:0004672|GO:0006468
Phco3g02401 958 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 908 - -
Phco3g02401 958 SMART serkin_6 620 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g02401 958 Gene3D Phosphorylase Kinase; domain 1 580 695 - -
Phco3g02401 958 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Phco3g02401 958 Gene3D Transferase(Phosphotransferase) domain 1 696 907 - -
Phco3g02401 958 SUPERFAMILY L domain-like 45 382 - -
Phco3g02401 958 FunFam Leucine-rich repeat protein kinase family protein 584 695 - -
Phco3g02401 958 Gene3D Ribonuclease Inhibitor 221 417 IPR032675 -
Phco3g02401 958 SUPERFAMILY Protein kinase-like (PK-like) 605 916 IPR011009 -
Phco3g02401 958 CDD STKc_IRAK 626 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02401 Phco-Chr3 50587577 50595573 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Phco3g02401 Pkinase 6e-47 CL0016